Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01753 ATGACGATTGGTTCTTTCTTCATCAGAGCTTCCAGAGCTCTCACCACTCACCCTTTCTCCTCCAACTTCCTGCTTCTCTGTACTATCAGCGGTGGAGGTGTGGTGGCACTCTCAGAATCAGAATCACAATCAGAAGCTGAACGTCCTATTGTTGAAGATCATGAGCCGCGCAAAAAGAAAGTAGTTGTCCTTGGAACTGGATGGGCTGCTACCAGTTTCCTCAAGGGTTTGGATGCATCATTATATGATGTTCAGGTTGTTTCGCCTCGTAACTACTTTGCATTTACTCCCTTATTGCCAAGTGTCACTTGTGGGACAGTTGAAGCTCGGAGCATCGTTGAACCCGTCCGAAACATCATTAAAAAGAGTAAAGGAGAAATAAAATTTTGGGAGGCAGAATGTGTCAAGATTGATGCTGCAGGAAAAAAGGTTTTTTGCCGGTCTAATATTGAAAAGCTAGTGGGAAGTGGTGAATTTTCTCTGGACTACGACTTCTTGGTTGTATCGGTAGGAGCACAAGTAAATACTTTTAATACCCCGGGTGTCAAGGAGAATTGTCATTTTCTGAAGGATGTCGAGGATGCTCAGAAGATCAGACTGTCTGTAATAGATTGTCTTGAGAAGGCTGTTCTTCCAAGTCAATCTGAAGAGGAGCAAAGGTCAAATCTTCATTTTGTAATCGTTGGAGGAGGTCCTACTGGTGTTGAATTTGCTGCAGAGCTTCATGATTTTATCCAAGAAGATTTGATCAAATTATATCCAACCGTTAAAGATAAAGTGAAGATAACGTTAATTCAATCTGGGGATCACATTTTGAACATGTTTGATGAAAGAATAAGTTTATTTGCTGAGCAAAAGTTTACAAGAGATGGTATAGAAGTTCAAACTGGATGCCGTGTTTTGAGTGTTAATGAGAAAGAAATTACAATGAAGGTGAAATCAACAGGAGTGGTTTCCTCTGTGCCTCATGGATTGGTTATCTGGTCCACTGGCATTTCTACTCTTCCTGTTATAAAGGACTTTATGGAAGAAATTGGTCAGACTAAAAGGCACGTACTAGCAACTGACGAATGGTTGAGAGTAAACGGATGTGAAGATGTGTTTGCCATTGGTGATTGCTCATCAATAAAGCAACGTAAAATCATGGATGACATCTTGGACATATTTAAGGCCGCAGACAAAGATAACTCCGGTACCTTAACCGTAGAAGAATTCAAAGAAGTGATGGATGACATAATCTTAAGATATCCTCAAGTTGAATACTATCTACAGAAGAAACATATACTTGATCTGAGGGTTCTGTGGAACGATGCAGAAGGAAATGAAAGAAAAGAAATAGACATAGAAGGGTTGAAGCTTGCCCTTTCTGTTGCAGATTCACAAGTGAAGACTCTTCCAGCAACTGCACAGGTTGCTGCGCAACAAGGTGCATATCTAGCTAGTTGTTTTAACCGCAATGATGAATGTAAAGATCATCCCGAAGGACCTCGACGATTTACAGAATCTGGACATCATCGGTTTCTCCCCTTCCGGTATAAGCATTTTGGGCAATTTGCTCCATTGGGCGGGGAGCAGGCAGCAGCAGAACTTCCTGGAGACTGGGTTTCCATCGGTCACAGCACTCAGTGGCTTTGGTATTCTGTATATGCAAGATACAAAACATTTGCTGCGTTATTCAACTTGCAGCAAGCAAGTGAGCTGGCGCACACGGTATTTGGTCGTGTCCGATTGGACTAG 1737 0.4197 MTIGSFFIRASRALTTHPFSSNFLLLCTISGGGVVALSESESQSEAERPIVEDHEPRKKKVVVLGTGWAATSFLKGLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKSKGEIKFWEAECVKIDAAGKKVFCRSNIEKLVGSGEFSLDYDFLVVSVGAQVNTFNTPGVKENCHFLKDVEDAQKIRLSVIDCLEKAVLPSQSEEEQRSNLHFVIVGGGPTGVEFAAELHDFIQEDLIKLYPTVKDKVKITLIQSGDHILNMFDERISLFAEQKFTRDGIEVQTGCRVLSVNEKEITMKVKSTGVVSSVPHGLVIWSTGISTLPVIKDFMEEIGQTKRHVLATDEWLRVNGCEDVFAIGDCSSIKQRKIMDDILDIFKAADKDNSGTLTVEEFKEVMDDIILRYPQVEYYLQKKHILDLRVLWNDAEGNERKEIDIEGLKLALSVADSQVKTLPATAQVAAQQGAYLASCFNRNDECKDHPEGPRRFTESGHHRFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYARYKTFAALFNLQQASELAHTVFGRVRLD 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01753 578 ProSitePatterns EF-hand calcium-binding domain. 393 405 IPR018247 -
Vivi5g01753 578 SUPERFAMILY EF-hand 338 461 IPR011992 -
Vivi5g01753 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 409 - -
Vivi5g01753 578 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Vivi5g01753 578 Gene3D - 441 557 - -
Vivi5g01753 578 Gene3D - 49 394 - -
Vivi5g01753 578 SUPERFAMILY FAD/NAD(P)-binding domain 58 276 IPR036188 -
Vivi5g01753 578 PANTHER NADH DEHYDROGENASE 54 551 IPR045024 GO:0003954|GO:0006116
Vivi5g01753 578 SUPERFAMILY FAD/NAD(P)-binding domain 223 377 IPR036188 -
Vivi5g01753 578 Pfam Pyridine nucleotide-disulphide oxidoreductase 59 381 IPR023753 GO:0016491
Vivi5g01753 578 SMART efh_1 384 412 IPR002048 GO:0005509
Vivi5g01753 578 Pfam EF hand 385 410 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01753 Vivi-Chr5 62769964 62773514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01753 5 574 Chloroplast and Mitochondria Gene Families AT4G21490 59.478 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01753 K03885 - gmx:100793566 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01753 5 62769964 62773514 Vivi5g01753 5 62769964 62773514 ECH