Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01732 ATGACAGACATGTCTCTTAACAACAATCATTTAACTGGAGAAATACCAGATGCGTTTCAGTCATTTACACAATTGATCAATCTAGATTTATCTAGTAATAATCTGAGTGGGGAACTGCCTCCTTCGGTGGAGAATTTGTCATCTTTGACCACCCTACGCTTGCAGGATAATCAACTATCTGGGACACTTGATGTTTTACAAGACCTTCCTCTGAAAGATTTGAATGTCGAGAACAACCAATTTGTTGGCCCAATACCTCCAAAGCTGCTAAGTATCCCTAACTTCAGACAAGCTGGAAATCCATTTAATGATAATACCACGGTAACTCCTGCTCCTCCACCTCGCTCCCCAGTAACAGCACCGCCAGGAGCACCTCCCGGAGAACCTTCAGGAGCACCTCCAGGAACACCGCCAGGAGCACCATTTTTTGTTGTACCATCTGGTCCTGGTCGTGTACCTCCTAAAAAGGCTGATGGACCAACTGCAGCGGTTGAGTCAAATTCTGGGAAATCAAACAAACATACCAAAAGGGTAGTTTTAATATCTATTGGCAGTGTTTTGGCATTCATAATTTTGGTACTAGCACTCGTTCTATTTATTCCAAGATGTGGTAAAAGGGAACGAGTTGACCGAAGGTCCAAACGACATCAAATTGGTGCTTTTGGAGGTGAAAGGCAACAAAATCCTAGGGATTTAGGGGCTATAGTCCTACCACCTAATCAAACAGACAAAGTACCGACCCGTGATGTCTTGAGGCCAAATAACGACCGCCAAGAAGAGCCTAGGAGAGCGTGGGCTGTTCCGATTCCAAATGCACAGGATAAGAAAGAGAAGGATGTGCCAAGAATGGCGACAATACCAAAGCCGAGAGATCATGAGATTGATATGAGTACACCAGAAGTATATTTTGTGCCTCCGCCGCCGCCGCCGCCGCCCCCTCCTCCTCCGCCACCGCCACCCCCACCTCCTCCTCCCCCTCCTACTATGAGGATGATTGTTGAGCCAGCCATTCCCCACAGAGGGACTAATGTTAATCCATCCTTAAGAAGTTCAATTTTTCCTCCTACTTTTGCAAAATCTTTCACCATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGTTGGGCACTGTGTACAGGGCAGAGCTTCCTGATGGGAAGTTGTTTGCTGTAAAGAAACTAGACAAAAGAACCTCTGTTCACCAGAAGGATGATGAGTTTCTTGAATTGATTAATAATATTGACAGAATAAGACATACAAATATTGTTGAGCTTATTGGATACTGTTCAGAGCATGGACAAAGGCTTCTGATCTATGAGTACTGCAGTAACGGGTCACTATATGATGTACTCCACTCAGATGATGAATTCAAAGCAACACTATCATGGAATACTCGCATTCGGATGGCACTTGGTGCAGCTAGAGCCTTAGAATATTTGCATGAGCAATGTCAGCCCCCTGTGGTACACAGAAATTTGAAGTCCGCCAATGTTCTCCTTGATGATGATCTATCTGTGCGTGTATCTGATTGTGGTTTAGCTCCATTAATAGCTTCAGGTTCTGTAACTCAGCTCTCGGGTAACCTGCAATCAGCTTACGGTTATGGAGCTCCAGAGTTTGAATCAGGAACTTACACTTACCAAAGTGACGTTTACAGTGTTGGAGTTGTTATGTTAGAACTTTTAACCGGCCGTCAGTCCCATGACAGCACACGTCCACGAGGGGAGCAATTTCTTGCTAGATGGGCGATTCCCAAACTTCACGATATCGATGCATTATCAAAAATGGTCGACCCTTCTTTAAATGGAGTTTACCCTGCAAAGTCATTGTCAAATTTCGCAGACATTATTTCACGATGCCTTCAGCCGGAGCCTGAATTTAGACCAGCAATGTCAGAAGTTGTCTTATACTTACTAAATATGATAAAGAGGGAGTCTCAGAAAAGTGATTCAAATGAAAAATGA 1992 0.4388 MTDMSLNNNHLTGEIPDAFQSFTQLINLDLSSNNLSGELPPSVENLSSLTTLRLQDNQLSGTLDVLQDLPLKDLNVENNQFVGPIPPKLLSIPNFRQAGNPFNDNTTVTPAPPPRSPVTAPPGAPPGEPSGAPPGTPPGAPFFVVPSGPGRVPPKKADGPTAAVESNSGKSNKHTKRVVLISIGSVLAFIILVLALVLFIPRCGKRERVDRRSKRHQIGAFGGERQQNPRDLGAIVLPPNQTDKVPTRDVLRPNNDRQEEPRRAWAVPIPNAQDKKEKDVPRMATIPKPRDHEIDMSTPEVYFVPPPPPPPPPPPPPPPPPPPPPPPTMRMIVEPAIPHRGTNVNPSLRSSIFPPTFAKSFTIASLQQYTNSFSQENLIGGGMLGTVYRAELPDGKLFAVKKLDKRTSVHQKDDEFLELINNIDRIRHTNIVELIGYCSEHGQRLLIYEYCSNGSLYDVLHSDDEFKATLSWNTRIRMALGAARALEYLHEQCQPPVVHRNLKSANVLLDDDLSVRVSDCGLAPLIASGSVTQLSGNLQSAYGYGAPEFESGTYTYQSDVYSVGVVMLELLTGRQSHDSTRPRGEQFLARWAIPKLHDIDALSKMVDPSLNGVYPAKSLSNFADIISRCLQPEPEFRPAMSEVVLYLLNMIKRESQKSDSNEK 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01732 663 Pfam Leucine rich repeat 3 59 IPR001611 GO:0005515
Vivi5g01732 663 SUPERFAMILY L domain-like 4 95 - -
Vivi5g01732 663 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 451 661 - -
Vivi5g01732 663 MobiDBLite consensus disorder prediction 220 263 - -
Vivi5g01732 663 MobiDBLite consensus disorder prediction 249 263 - -
Vivi5g01732 663 SUPERFAMILY Protein kinase-like (PK-like) 349 647 IPR011009 -
Vivi5g01732 663 MobiDBLite consensus disorder prediction 301 330 - -
Vivi5g01732 663 Gene3D Transferase(Phosphotransferase) domain 1 451 663 - -
Vivi5g01732 663 ProSiteProfiles Protein kinase domain profile. 373 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01732 663 MobiDBLite consensus disorder prediction 299 330 - -
Vivi5g01732 663 Pfam Protein tyrosine and serine/threonine kinase 376 645 IPR001245 GO:0004672|GO:0006468
Vivi5g01732 663 MobiDBLite consensus disorder prediction 107 148 - -
Vivi5g01732 663 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 657 IPR046959 -
Vivi5g01732 663 MobiDBLite consensus disorder prediction 94 173 - -
Vivi5g01732 663 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 340 450 - -
Vivi5g01732 663 SUPERFAMILY Formin homology 2 domain (FH2 domain) 317 326 - -
Vivi5g01732 663 Gene3D Ribonuclease Inhibitor 1 108 IPR032675 -
Vivi5g01732 663 Gene3D Phosphorylase Kinase; domain 1 342 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01732 Vivi-Chr5 61692296 61698169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01732 1 658 Strubbelig Receptor Gene Family AT4G03390 58.533 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vivi5g01732 PK_Tyr_Ser-Thr 9.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01732 - - mtr:25492087 1027.7