Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01729 ATGGCAAAGCAGATCCACGAGATCAAGGAATTTCTCTTGACGACGCGTAGAAAGGACGCGAGATCTGTTAAAATCAAGAGGAGTAAGGATGTGGTACTGAAGTTCAAGATTCGTTGCTCGAAGTATCTGTACACGCTGTGTGTGTTTGATACTGATAAGGCTGATAAGTTGAGGCAATCTCTTCCTCCCAGTTTGATTGTTCAAGATCTGTAG 213 0.4319 MAKQIHEIKEFLLTTRRKDARSVKIKRSKDVVLKFKIRCSKYLYTLCVFDTDKADKLRQSLPPSLIVQDL 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01729 70 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vivi5g01729 70 FunFam 60S ribosomal protein L38 1 70 - -
Vivi5g01729 70 Gene3D - 1 70 IPR038464 -
Vivi5g01729 70 Pfam Ribosomal L38e protein family 3 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01729 Vivi-Chr5 61625695 61626124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01729 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 82.857 5.43e-37 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01729 K02923 - qsa:O6P43_007781 121.709