Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01724 ATGAATCCAAATGATGAGAAAAACTCTCCCAAGTTTGATGCATCAGTGCCTGTGCCTATGGAGTGTTTGCTGATGAACAACACTGTTCCTCCGTTTCTGTCAAAAACATTCGATTTAGTGGATGAACCTTGTTTGAATCCGATTATATCATGGAGTTCTAGTGGTTCTAGCTTCGTTGTGTGGGACCCTTTGGAGTTTGCTAGAATCATTTTGCCTAGACATTTCAAACACAACAATTTCTCCAGTTTTGTTCGTCAGCTTAATACTTATGGATTCCGAAAGATCGACACTGACAAATGGGAGTTTTTCAATGAAGGTTTCCAAAAAGGGAAGAAGCATTTACTGAAGAACATTCAAAGGCGCCGGTCGTCTCAATCTCAACAAGTTGGTAACTATGTTGGATCTTCTTCTGATGCAGGGAAATTTGGAGCCGAGGTTGAGATAGAAAGATTGAAGAAGGAGAGGAGTGTCTTAATGCAAGAAATGGTTGATTTGCAGAAACAACAGCGAGCAACAGCTCATCAAGCAGGAAATGTGAATCAAAGGCTTCAATCTGCTGAACAAAGGCAGAAACAAATGGTTTCCTTCTTAGCCAAGTTATTTCAAAATCCGGACTTTTTAGCGCGGCTTAAGCAGAAGAAGGAACAAAAAGATATAGAATCTCCAAGAGTCAGAAGGAAGTTTGTTAAGCAACACCAAAATGAAGAAGAGAGTCTCAAAGATGGGAAGATAGTGAGGTACCAAGCAAATTGTGAAAGTAAAGAACTAAGTCCAGTTTCCATCGAACACTCTCCGCTCTATCTTTCACATGATTTAGCTAAAGAATTGAGTGCAGGTGAAGATGATTTTACTTCTCAAATTGAGAATATTTCTTTAGAAGAATATGCTGCAATGCATGATATTTTGTCACCTAATTCAGAAATCATTATTGGTGAAGGATCATCTAGCTTTGGACTTGATGAACAATTGTTCAAAGGGAAAAATGTTATTAGTCCAAATGAAGAAGCTATAACTGAGAATTTTGAAGTGTTTCAAGAGTTTCAACTTCTAGGGACAGAAAGTGTTATCAAGCAAGAAGACATGTGGGGTCCAAACATGAATGTTGGTTCAAGCTGTGGGAATGAGATGTGGGGAAATCCTTTGAATTATGGAGTACCTGAGTTTGGAGTTATTACAAGTGACATGTCAGAGACAGATGTGTGGGATATTGGTTTTGGAAGTTTAGGTATTGATAAGTGGCCAGTTGATGAATCTTCTTTTGATGAGATAGATAGTCAAGCTGGTAAGCCGAAAGATTATTAG 1302 0.3848 MNPNDEKNSPKFDASVPVPMECLLMNNTVPPFLSKTFDLVDEPCLNPIISWSSSGSSFVVWDPLEFARIILPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEGFQKGKKHLLKNIQRRRSSQSQQVGNYVGSSSDAGKFGAEVEIERLKKERSVLMQEMVDLQKQQRATAHQAGNVNQRLQSAEQRQKQMVSFLAKLFQNPDFLARLKQKKEQKDIESPRVRRKFVKQHQNEEESLKDGKIVRYQANCESKELSPVSIEHSPLYLSHDLAKELSAGEDDFTSQIENISLEEYAAMHDILSPNSEIIIGEGSSSFGLDEQLFKGKNVISPNEEAITENFEVFQEFQLLGTESVIKQEDMWGPNMNVGSSCGNEMWGNPLNYGVPEFGVITSDMSETDVWDIGFGSLGIDKWPVDESSFDEIDSQAGKPKDY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01724 433 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01724 433 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01724 433 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01724 433 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01724 433 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 239 IPR027725 -
Vivi5g01724 433 Coils Coil 148 168 - -
Vivi5g01724 433 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01724 433 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01724 433 Gene3D - 24 122 IPR036388 -
Vivi5g01724 433 FunFam Heat stress transcription factor B-4 25 122 - -
Vivi5g01724 433 SUPERFAMILY "Winged helix" DNA-binding domain 27 121 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01724 Vivi-Chr5 61439394 61442047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01724 14 415 HSF AT5G03720 44.819 1.33e-100 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi5g01724 HSF_DNA-bind 3.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01724 K09419 - gmx:100780835 511.146