Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01722 ATGAATCCAAATGATGAGAAAAACTCTCCCAAGTTTGATGCATCAGTGCCTGTGCCTATGGAGTGTTTGCTGATGAACAACACTGTTCCTCCGTTTCTGTCAAAAACATTCGATTTAGTGGATGAACCTTGTTTGAATCCGATTATATCATGGAGTTCTAGTGGTTCTAGCTTCGTTGTGTGGGACCCTTTGGAGTTTGCTAGAATCATTTTGCCTAGACATTTCAAACACAACAATTTCTCCAGTTTTGTTCGTCAGCTTAATACTTATGGATTCCGAAAGATCGACACTGACAAATGGGAGTTTTTCAATGAAGGTTTCCAAAAAGGGAAGAAGCATTTACTGAAGAACATTCAAAGGCGCCGGTCGTCTCAATCTCAACAAGTTGGTAACTATGTTGGATCTTCTTCTGATGCAGCAGGGAAATTTGGAGCCGAGGTTGAGATAGAAAGATTGAAGAAGGAGAGGAGTGTCTTAATGCAAGAAATGGTTGATTTGCAGAAACAACAGCGAGCAACAGCTCATCAAGCAGGAAATGTGAATCAAAGGCTTCAATCTGCTGAACAAAGGCAGAAACAAATGGTTTCCTTCTTAGCCAAGTTATTTCAAAATCCGGACTTTTTAGCGCGGCTTAAGCAGAAGAAGGAACAAAAAGATATAGAATCTCCAAGAGTCAGAAGGAAGTTTGTTAAGCAACACCAAAATGAAGAAGAGAGTCTCAAAGATGGGAAGATAGTGAGGTACCAAGCAAATTGTGAAAGTAAAGAACTAAGTCCAGTTTCCATCGAACACTCTCCGCTCTATCTTTCACATGATTTAGCTAAAGAATTGAGTGCAGGATCATCTAGCTTTGGACTTGATGAACAATTGTTCAAAGGGAAAAATGTTATTAGTCCAAATGAAGAAGCTATAACTGAGAATTTTGAAGTGTTTCAAGAGTTTCAACTTCTAGGGACAGAAAGTGTTATCAAGCAAGAAGACATGTGGGGTCCAAACATGAATGTTGGTTCAAGCTGTGGGAATGAGATGTGGGGAAATCCTTTGAATTATGGAGTACCTGAGTTTGGAGTTATTACAAGTGACATGTCAGAGACAGATGTGTGGGATATTGGTTTTGGAAGTTTAGGTATTGATAAGTGGCCAGTTGATGAATCTTCTTTTGATGAGATAGATAGTCAAGCTGGTAAGCCGAAAGATTATTAG 1203 0.3932 MNPNDEKNSPKFDASVPVPMECLLMNNTVPPFLSKTFDLVDEPCLNPIISWSSSGSSFVVWDPLEFARIILPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEGFQKGKKHLLKNIQRRRSSQSQQVGNYVGSSSDAAGKFGAEVEIERLKKERSVLMQEMVDLQKQQRATAHQAGNVNQRLQSAEQRQKQMVSFLAKLFQNPDFLARLKQKKEQKDIESPRVRRKFVKQHQNEEESLKDGKIVRYQANCESKELSPVSIEHSPLYLSHDLAKELSAGSSSFGLDEQLFKGKNVISPNEEAITENFEVFQEFQLLGTESVIKQEDMWGPNMNVGSSCGNEMWGNPLNYGVPEFGVITSDMSETDVWDIGFGSLGIDKWPVDESSFDEIDSQAGKPKDY 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01722 400 Gene3D - 24 122 IPR036388 -
Vivi5g01722 400 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01722 400 Coils Coil 149 169 - -
Vivi5g01722 400 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01722 400 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01722 400 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01722 400 FunFam Heat stress transcription factor B-4 24 122 - -
Vivi5g01722 400 SUPERFAMILY "Winged helix" DNA-binding domain 27 121 IPR036390 -
Vivi5g01722 400 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01722 400 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g01722 400 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 240 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01722 Vivi-Chr5 61439389 61442047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01722 14 382 HSF AT5G03720 48.177 2.70e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi5g01722 HSF_DNA-bind 2.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01722 K09419 - gmx:100780835 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01722 5 61439389 61442047 Vivi5g01722 5 61439389 61442047 ECH