Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01688 ATGGCGTTAGATCAATACATGTCCCAAAACAATTCCTTTGAAGATAAACCGTCTTTGAAAACCTGGAATACCACCACAGATTCTAATAGAAATGCATCTGCTGGCTTTGACTGCAACATCTGCTTAGAGTGTGTGCAAGATCCAGTAGTCACGTTTTGTGGTCACCTTTACTGCTGGCCTTGCATTTACAAATGGATTCATATGCAAACAAGTATCTCTTCCGAATATGAGGAGAAGCAGAAGCCACAATGTCCAGTATGCAAATCAGAACTGTCTCAATCCTCGCTAGTTCCATTATACGGCCGTGGCCAATCCACGACAGCTTGTCAAGCTGGGAATGATGTACCTCAAAGACCTTTGGGTCCCAGATCATATAATACTACAACTGTTTCACAACCTACTTATCAAAGTTATTATCAACCTCGACAGTTCAACTCAATTCCTAGCAGTTACCCTTCACCCATGTTTAGCACAAGTGGTTCGTCATTGGACAACTCATTTGGAATCTTCGGTGAAATGATATACGCGAGGGTGTTCGGTAACCAGATGGAAAACATGTATACATATCGTAATTCGTATAGTTTTCAAGGGAACAATAATCCAAGGGTTAGAAGACATTTAATGCAAGTTGATAAATCACTAAGCAGAATCTTTTTTTTCCTCCTTTGCTGCTTAGTTATGTGTCTTCTCTTATTCTGA 699 0.402 MALDQYMSQNNSFEDKPSLKTWNTTTDSNRNASAGFDCNICLECVQDPVVTFCGHLYCWPCIYKWIHMQTSISSEYEEKQKPQCPVCKSELSQSSLVPLYGRGQSTTACQAGNDVPQRPLGPRSYNTTTVSQPTYQSYYQPRQFNSIPSSYPSPMFSTSGSSLDNSFGIFGEMIYARVFGNQMENMYTYRNSYSFQGNNNPRVRRHLMQVDKSLSRIFFFLLCCLVMCLLLF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01688 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 105 IPR013083 -
Vivi5g01688 232 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Vivi5g01688 232 Pfam Zinc finger, C3HC4 type (RING finger) 38 87 IPR018957 GO:0046872
Vivi5g01688 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi5g01688 232 SMART ring_2 38 87 IPR001841 -
Vivi5g01688 232 ProSiteProfiles Zinc finger RING-type profile. 38 88 IPR001841 -
Vivi5g01688 232 SUPERFAMILY RING/U-box 35 100 - -
Vivi5g01688 232 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01688 Vivi-Chr5 58461473 58463869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01688 31 232 C3H Transcription Factor Family AT4G28270 42.718 1.89e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01688 K10666 - gmx:100786373 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01688 5 58461473 58463869 Vivi5g04110 5 137432585 137433807 PCT