Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01677 ATGTTTCTGACTCTTACTCTTGTTTCAATGTCTTCTTCATGGATTCATTTCAAGGATTATTACAAAGTGCTGGAGATTGATTATGATGCAACGGATGAAGATATTAGATTAAATTACCGAAGACTCGCCCTGAAATGGCATCCCGACAAACACATTGATGATACTTCTGTTACTGCACAATTTCAACAGATAAATGAAGCTTACACTGTATTGAGCGATCCTGTCAAGCGTCTTGACTATGATTTAACAGGGGCATGTGTGATTGACAAGTACAGCTTGCAGGAATATCTGGCCAGATTTAAAGGAATGATTCTCACCTGCAATGGACTTGGTATCAACCATGAAGACAGATGA 354 0.387 MFLTLTLVSMSSSWIHFKDYYKVLEIDYDATDEDIRLNYRRLALKWHPDKHIDDTSVTAQFQQINEAYTVLSDPVKRLDYDLTGACVIDKYSLQEYLARFKGMILTCNGLGINHEDR 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01677 117 FunFam Chaperone protein DNAj, putative 11 98 - -
Vivi5g01677 117 SMART dnaj_3 18 76 IPR001623 -
Vivi5g01677 117 Gene3D DnaJ domain 8 97 IPR036869 -
Vivi5g01677 117 SUPERFAMILY Chaperone J-domain 6 85 IPR036869 -
Vivi5g01677 117 CDD DnaJ 19 73 IPR001623 -
Vivi5g01677 117 PRINTS DnaJ domain signature 39 54 IPR001623 -
Vivi5g01677 117 PRINTS DnaJ domain signature 76 95 IPR001623 -
Vivi5g01677 117 PRINTS DnaJ domain signature 21 39 IPR001623 -
Vivi5g01677 117 PRINTS DnaJ domain signature 56 76 IPR001623 -
Vivi5g01677 117 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 13 115 - -
Vivi5g01677 117 Pfam DnaJ domain 19 81 IPR001623 -
Vivi5g01677 117 ProSiteProfiles dnaJ domain profile. 19 84 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01677 Vivi-Chr5 57200862 57203753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01677 11 81 C2H2 Transcription Factor Family AT1G74250 44.737 1.34e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01677 - - mtr:120580229 190.66