Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01670 ATGAATAGCAGCGGTGGCAGTAATGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGATGATGATGGGTTTCAATAAATCATCACCTTTTACAGTTTCTCAGTGGCAGGAACTTGAACATCAAGCTTTGATCTTCAAGTATATGGTTGCTGGTCTTCCTGTTCCACCTGATCTCGTTCTTCCCTTTCACTCTCACAATTTCTTTCACCATTCTATTCCTACCCTGAGTTATTGTTCCTTCTATGGAAAAAAGGTGGACCCGGAACCAGGACGATGTAGGAGGACCGATGGAAAAAAATGGAGGTGCTCTAAGGAAGCATACCCTGACTCCAAATACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACCAACAACTCTTGTCGCTGCTCCCACCACTACACCTCCAAACTTCCACAACCTTCCCACAACAAATGCCTATGCTACTCTTCAAAATGATTCTCATCTTGATACCATTCCCTATGGGATTCCAAGTAAACAATACAGGTATGTTCAAGGTCTTAAATCTGAGGGTGGAGAACATAGCTGCTTTGCAGAAGCTTCAGGTGGAGGCCACAAGTGTCTCCAAATGGAGTCTCAGCTAGAAAACTCATGGCCTTTGATGTCAACCAGAGTTTCCTCTTTTTCTGCATCAAAATCAAGTAATAATCCCATGTTGCAGAGTGATTATCCCCAGCATTCGTTTTTATCAACTGAATATGGATCTGGAGAAGCTGTGAAGGAAGAGGGCCAGCCTCTTCGATCCTTTTTCAATGAATGGCCTAAGAGCAGAGAGTCATGGTCTGGTTTGGAAGATGAAAGGTCCAACCAAACAGCCTTCTCCACTACTCAACTCTCAATATCCATTCCCATGTCATCTTCTGACTTCTCTGCCACAAGCTCTCAGTCGCCACACGATAACTAG 945 0.4571 MNSSGGSNGGGGGGGGGGGMMMGFNKSSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPFHSHNFFHHSIPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESPTTLVAAPTTTPPNFHNLPTTNAYATLQNDSHLDTIPYGIPSKQYRYVQGLKSEGGEHSCFAEASGGGHKCLQMESQLENSWPLMSTRVSSFSASKSSNNPMLQSDYPQHSFLSTEYGSGEAVKEEGQPLRSFFNEWPKSRESWSGLEDERSNQTAFSTTQLSISIPMSSSDFSATSSQSPHDN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01670 314 ProSiteProfiles WRC domain profile. 86 130 IPR014977 -
Vivi5g01670 314 MobiDBLite consensus disorder prediction 127 144 - -
Vivi5g01670 314 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g01670 314 ProSiteProfiles QLQ domain profile. 29 64 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi5g01670 314 SMART QLQ_2 28 64 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi5g01670 314 MobiDBLite consensus disorder prediction 118 144 - -
Vivi5g01670 314 MobiDBLite consensus disorder prediction 274 314 - -
Vivi5g01670 314 PANTHER GROWTH-REGULATING FACTOR 5 20 302 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi5g01670 314 Pfam WRC 87 129 IPR014977 -
Vivi5g01670 314 MobiDBLite consensus disorder prediction 279 314 - -
Vivi5g01670 314 Pfam QLQ 29 61 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01670 Vivi-Chr5 56742885 56745965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01670 29 129 GRF Transcription Factor Family AT3G13960 61.468 1.18e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi5g01670 WRC 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01670 - - vvo:131606650 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01670 5 56742885 56745965 Vivi5g01670 5 56742885 56745965 ECH