Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01635 ATGGCACGATCGTTGGAAAAAATCGTTGATGTTAACGATGAAAAGGAACTTTGGAAAGTTGTTGTTAAAATACATCACAAATGGAGTGTCATCTCTAACAACAAGGAACATTTTGAGATGGTTGTTTATGATTCTAAGTATATTTTGTTTTGGAAGGTTAAGATTGGGTTGTTGGGAGGTGTTAATGACGAAGATTTTGGAAGTGATATCCATGTTACCGTACCTCCCGTGTATAGGCAGAGTTTTGATTCGCTCTTTGTTGTTAATGATACTTACACTATTGCAAACTTCCAAGTTCAGCTGAATGATCTGCTATTCAAACCTTCTGCTCACAAGTACCTCCTTAAATTTACTGGTGGGACCAAAGTTGGGGACAAAAACGTGCATCAGATTCAGGAAAAGGCTTGGAGACTCACTCCTTTTCGTGATATTTTAACTGGGAAATGGAATAAAGATCAACTTTTAGATGTTATCGGAGTGGTTGATGAAATTGGGTACACACAGGCCCAGGTTGGAAGTAAAAAGCAACAGGTTAACTTTGTCATTCGCGACTTGAGCAACAACACTATAACGGTTACGTTATGGGAGGCGTGCGCGGTGCAGTTTATCAACTACGTTGAACGGCAGGTCGATACTGCCATTCCGGTTGTGATTCTGATTCAATATGCAAAAGTCAAAGAAGCTTTTGGCAAATATCCACTATCTGTTACCAATACTTACAATGTTACCAAAGTGGCTATTAATGAAGACATGGAGACTATCAAACAATTTGCCAAAATGCTTACACAGGATACTATAATGGTTGTCTCGGGCCTTCGCACTCAGCAGTCTCAGGGCAGGTCGCAAAACTCATACACTTCTCGCCAATCACCTACCCAAAAATTATTATCTAATGTTATTCTTTTTCCTCTTGAGAAAATAGTTAAACTCAAAGACACTACTTTTTGTGCTACGGTTGCTACAATTACAAAAATCTTTGCCTCAAAATATGGCTGGTACTACCAGGCATGCCATGAATGCCCAAATAAAGTCACCGGTGATAAACCTCCCTACAAGTGTGTAAAGGGACATGACACTGAAACTGCCATATTCATGTATAAAATAGAGGTGGGTGTTCTTCATGCTGGTACAAAATGCAAGTTTGTTTTGTGGGACAAGGAAAGTGAGGAACTATTGGAGGTGTCGGTTGCTCATATGCGCGAAACAATGTTTCAGGCTGGAATATTTGATCCCCTTGATTTCCCACTGGCACTTGACAAGCTCCTGGATCAGGAACTTGCCTTTAAAGTCAAGTGGCAACCAGATTGGTCTAATTGCTCTGTCATCATGTTGGCGAAAGATAAACCTATAGTCAAGGAGAGTGTTAATGAGGCTGTTCCTGTTGATGATTCTGACATTGTTATAGTGTGGTTTTGA 1416 0.4011 MARSLEKIVDVNDEKELWKVVVKIHHKWSVISNNKEHFEMVVYDSKYILFWKVKIGLLGGVNDEDFGSDIHVTVPPVYRQSFDSLFVVNDTYTIANFQVQLNDLLFKPSAHKYLLKFTGGTKVGDKNVHQIQEKAWRLTPFRDILTGKWNKDQLLDVIGVVDEIGYTQAQVGSKKQQVNFVIRDLSNNTITVTLWEACAVQFINYVERQVDTAIPVVILIQYAKVKEAFGKYPLSVTNTYNVTKVAINEDMETIKQFAKMLTQDTIMVVSGLRTQQSQGRSQNSYTSRQSPTQKLLSNVILFPLEKIVKLKDTTFCATVATITKIFASKYGWYYQACHECPNKVTGDKPPYKCVKGHDTETAIFMYKIEVGVLHAGTKCKFVLWDKESEELLEVSVAHMRETMFQAGIFDPLDFPLALDKLLDQELAFKVKWQPDWSNCSVIMLAKDKPIVKESVNEAVPVDDSDIVIVWF 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01635 471 SUPERFAMILY Nucleic acid-binding proteins 5 123 IPR012340 -
Vivi5g01635 471 Gene3D - 130 265 IPR012340 -
Vivi5g01635 471 Gene3D - 3 125 IPR012340 -
Vivi5g01635 471 SUPERFAMILY Nucleic acid-binding proteins 138 264 IPR012340 -
Vivi5g01635 471 CDD RPA1_DBD_A_like 19 123 - -
Vivi5g01635 471 Pfam Replication protein A OB domain 149 239 IPR031657 -
Vivi5g01635 471 Gene3D - 268 462 IPR012340 -
Vivi5g01635 471 SUPERFAMILY Nucleic acid-binding proteins 311 438 IPR012340 -
Vivi5g01635 471 CDD RPA1_DBD_B_like 156 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01635 Vivi-Chr5 54373423 54375909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01635 1 345 Core DNA Replication Machinery Family AT5G08020 22.380 9.58e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01635 - - vvo:131618919 758.444