Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01619 ATGGCATCTGAAACTGAAATTTTCGAACATTTTTCTCTGTACGACATGATAAGAAGTGTTAGAGAGATGGCTTCTGAAGATGAAGCTTCTCAACTTTCCTATTTGTTTGAAAGAATGATAAGAACCAGAGACATGTCTCTGTTCTTTCCCTTCATGTTTCGTCTTTATGGTTTATCAATTCGACGAAACGATGACGAAGACTCAGATCAAGAAACAGAGCGTAACGGAGATTCTAACCGTCAAAGATTCATCTTGATGAATCCATCAACACAGCGTATTATTCTAATCAACGAAGTTTCAAGTCTCGAAACTCTGCTTCACGAACTTGGAAGTACTACACATAATGGTCAACTGCCAGCTTCAAAGAAGTCAATAGATAGTATGAAAAGGGTTGAAATTGAAGAAAGTGATGATGGAGAGTGTGTTGTTTGTTTGGAACAATTTGAGATTGGTGGAGTTGTTAAAGAAATGCCTTGTAAGCACAAGTTTCATGGTGATTGTATTGAGAAATGGTTAAGAATTCATGGGTCTTGTCCTGTTTGTAGGTATCAGATGCCTATTAAGGAGAAAGAAGAAGAAAATTAA 585 0.3675 MASETEIFEHFSLYDMIRSVREMASEDEASQLSYLFERMIRTRDMSLFFPFMFRLYGLSIRRNDDEDSDQETERNGDSNRQRFILMNPSTQRIILINEVSSLETLLHELGSTTHNGQLPASKKSIDSMKRVEIEESDDGECVVCLEQFEIGGVVKEMPCKHKFHGDCIEKWLRIHGSCPVCRYQMPIKEKEEEN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01619 194 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Vivi5g01619 194 Pfam Ring finger domain 140 182 IPR001841 -
Vivi5g01619 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 188 IPR013083 -
Vivi5g01619 194 SUPERFAMILY RING/U-box 123 188 - -
Vivi5g01619 194 FunFam E3 ubiquitin-protein ligase RNF181 109 188 - -
Vivi5g01619 194 SMART ring_2 141 181 IPR001841 -
Vivi5g01619 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01619 Vivi-Chr5 52981091 52981722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01619 23 191 C3H Transcription Factor Family AT1G26800 46.893 5.69e-47 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01619 - - vvo:131606629 395.971