Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01587 ATGGGTTACTTCAATTTTTCTTGCAAAGCTGAATCTTCAATCTCAACCTCCAATTCTGTATCATCACCTCCAAAACCAAACAAAGAAAAACCTATCAAGATCCAACACTTTCACTACAGTGACCTTGAAGCTGCAACCAATGGTTTCTCAGACAACAAACTTCTTGGCAAAGGAAGCCATGGTTATGTCTACAAAGCAATTCTCCGTGGTAAGCCTGTAGCTGTGAAAAGACCATCTAGACCTCACTCTCTTAACCATCCTAACAGACCCATCTCAGCGTCTTCACCTGAAATCACTAATGAAGTTGATAACGAAATCGATATCTTGTCCAAAATTCAAAGCCCCAGGTTGGTTAATCTTGTTGGCTTCACCAATGATTCAAAAGATAGGCTTTTGGTTGTTGAGTTTATGAGCAATGGTACACTTTTTGATGTTCTTCATTCTTCTTCTAGAACGCTTAATTGGGGTAAAAGAATTCGTTTGGCTTTGCAGACTGCTAAAGCTATTGATGTACTTCATTCATCAAACCCGCCTGTGATTCATAGAGATATTAAATCTGCTAATGTTCTTATTGATCAGAATTATAATGCTAGGTTAGGTGATTTTGGTTTAGCACTCAGGGGTTTTGATAGGATAAGGTCAACTCCACCGGCGGGTACTATGGGGTATCTTGATCCTTTTTATGTAACACCTGATAATTTGAGTACTAAGATTGATGTTTTTAGTTTTGGGATTTTGTTGTTGGAGATTATAAGTGGAAGGAAAGCAATTGATGTTGCGTATTCGCCGCCATCGGTTGTGGATTGGGCTATTCCGCTTATTAAGAAAGGGAAGTTTTTTAGTGTTTATGATCCTAGAATAGCAGCTCCTCAGGATCCTGTTGTGAGGAAACAATTGGTTTTGATTGCGGCGAAATGTGTTAGGTCTTGTCGGGAAAGAAGGCCTTCTATGAATGAGGTTGTTAATTGGCTTTGTGGGTTGTGTAAATTGGTTCCAAATCATTCATGGAGTGGTTTCAATAATCCTTGTATGATGGTTGAAACTGTTGCACGGCCAGTTGAACCGAGAAACGGCCAGGTCAGTTCGAGGTTTGCAGAAGACGGGAATTTTAATGGTTTGGATGCTAGATTGTCGAAGTCTGCATTGAGATATTCGAGGAGAGTGTATTCTGATTTAGGGATCAGCAGTAACTTGATGGATCTAATGGCTACGACCGAAGATGCAGAGTTTCAAAGAGACAGTGCCGGCGTTGTTGAGCATAGTTCTAAATCAGCTGAACAAGTTTCTAGTTCAAGATTTGGTAGTGGGAGATATTTCACAAGAGGAAAAAATTTATACAGGCCTTGTGGTACTGAAAAGGATGCTTATGGTTTGAGTAAAAGCCATATTGTTGAGGAGAATTCTTCAAAACTAGATGAGGTTTCTGGGTCAGCTTTGAATTCTCTTGCAACTGAGGCCATCTAA 1464 0.3989 MGYFNFSCKAESSISTSNSVSSPPKPNKEKPIKIQHFHYSDLEAATNGFSDNKLLGKGSHGYVYKAILRGKPVAVKRPSRPHSLNHPNRPISASSPEITNEVDNEIDILSKIQSPRLVNLVGFTNDSKDRLLVVEFMSNGTLFDVLHSSSRTLNWGKRIRLALQTAKAIDVLHSSNPPVIHRDIKSANVLIDQNYNARLGDFGLALRGFDRIRSTPPAGTMGYLDPFYVTPDNLSTKIDVFSFGILLLEIISGRKAIDVAYSPPSVVDWAIPLIKKGKFFSVYDPRIAAPQDPVVRKQLVLIAAKCVRSCRERRPSMNEVVNWLCGLCKLVPNHSWSGFNNPCMMVETVARPVEPRNGQVSSRFAEDGNFNGLDARLSKSALRYSRRVYSDLGISSNLMDLMATTEDAEFQRDSAGVVEHSSKSAEQVSSSRFGSGRYFTRGKNLYRPCGTEKDAYGLSKSHIVEENSSKLDEVSGSALNSLATEAI 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01587 487 FunFam Serine/threonine-protein kinase-like protein 137 337 - -
Vivi5g01587 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vivi5g01587 487 Gene3D Transferase(Phosphotransferase) domain 1 137 335 - -
Vivi5g01587 487 SMART serkin_6 49 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01587 487 ProSiteProfiles Protein kinase domain profile. 49 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01587 487 PANTHER OS01G0253100 PROTEIN 20 326 - -
Vivi5g01587 487 SUPERFAMILY Protein kinase-like (PK-like) 32 337 IPR011009 -
Vivi5g01587 487 Pfam Protein kinase domain 50 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01587 487 Gene3D Phosphorylase Kinase; domain 1 29 136 - -
Vivi5g01587 487 ProSitePatterns Protein kinases ATP-binding region signature. 55 76 IPR017441 GO:0005524
Vivi5g01587 487 MobiDBLite consensus disorder prediction 77 96 - -
Vivi5g01587 487 FunFam Serine/threonine-protein kinase-like protein At1g28390 17 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01587 Vivi-Chr5 50386609 50388739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01587 11 324 Receptor kinase-like Gene Family AT3G59420 41.796 1.17e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vivi5g01587 Pkinase 3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01587 - - vum:124832395 733.406