Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01572 ATGGGTAGGGGGAAGATTGAGATTAAAAGAATTGAAAATTCCAATAGCAGACAAGTTACATTTTCTAAGAGAAGAACTGGCTTGTTGAAGAAGGCTCAGGAGCTTGCTATTCTTTGTGATGCTGAGGTTGCTGTTATCATTTTCTCTAACACAGGGAAGCTTTTTGAGTTTTCTAGTTCTGGTATGAAGCGAACACTTTCAAGATACAACAAATGCACAGATTCTTCTGAGAGTGCATCAGTGGAATATAAAGCAGAGTGTTTTGTTCAGAAGGAAGATTCTAAGATGGTGGAGATTCTTAAAGATGAAGTTGCAAAACTAGAAACAAATCAATTACGGCTGTTGGGAAAGGACTTAGCAGGATTGGGATTAAAGGAACTGCAACTTCTAGAGCAGCAAATTAATGAAGCATTATTATCCGTGAAGGAGAAGAAGGAAGAATTACTTATGGAGCAACTGGAGCAGTCAAGGATACAGGAACAGAAGGCTATGTTGGAGAATGAAACTTTGCGCAGACAGGTTGAGGAGCTTCGTTGCTTGTTTCCAATGACAGAACATGTGATTCCAAATTATCTTCAGTATCACCATATGGAAAGAAATAATTCATTTGTAGATAATGGTGTTAAATGTCCCAGCTTGGCGAGAAGCTGCTCAAATGACAAAGGAGATTCAGACACCACATTGCATTTAGGGTTACCAAGTGATGTTCATCACAAGAGGAAGACTCCAGAGAAAAAAACCTTTTCTGATGATTCATAG 759 0.3874 MGRGKIEIKRIENSNSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSESASVEYKAECFVQKEDSKMVEILKDEVAKLETNQLRLLGKDLAGLGLKELQLLEQQINEALLSVKEKKEELLMEQLEQSRIQEQKAMLENETLRRQVEELRCLFPMTEHVIPNYLQYHHMERNNSFVDNGVKCPSLARSCSNDKGDSDTTLHLGLPSDVHHKRKTPEKKTFSDDS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01572 252 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi5g01572 252 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vivi5g01572 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi5g01572 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi5g01572 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi5g01572 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi5g01572 252 MobiDBLite consensus disorder prediction 232 252 - -
Vivi5g01572 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi5g01572 252 MobiDBLite consensus disorder prediction 218 252 - -
Vivi5g01572 252 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vivi5g01572 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi5g01572 252 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vivi5g01572 252 Pfam K-box region 94 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi5g01572 252 Coils Coil 127 147 - -
Vivi5g01572 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi5g01572 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Vivi5g01572 252 Coils Coil 153 180 - -
Vivi5g01572 252 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01572 Vivi-Chr5 49721360 49725457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01572 1 252 MADS-box Gene Family AT5G13790 55.336 7.11e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi5g01572 K-box 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01572 - - rcu:8259342 325.094