Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01541 ATGAAGAGATTGAGGTCAAGCGAAGATCTTCACTCGTATAACAGCGGTGGTGGCGATAAGAACGGCGATAAGAACGGTGATAAGATTGGTGATAAGAATGGTGATAAGAATGGTTTTAAGGATTCGAATCTGAGCCGTTCGTTTTCTTCTACTGGTCAGAGAAGCTTTTACTACAAACAAGAGAATGTTCGCAAGGGTTTGGTATCTTCGTCTTCCTCACGATACGAGAGGGATCGGACGGTGGAGGAAGATCGGGAGGGTTCGAGAATTGTTCGGAAACGATCTGACCATGATTTCGATGGTTTTGATCGGAGGAAGGGTTTTGATCGGTATAGCCGGGATGGTGGTGGTTACAGCGGTGGTGGTGGGAGTGGGGATAGGAATTCGATTCACAGGTCGGAGAGTTTCAGTGGACCGAGGAGGGAGTTTCCGAAGGGGTTTCGTTCGGAGAGGGATCGGTCGAGGAGGGAGGGGAGTGTGTCCTCTTGGAGGAGAGGGCTGAAGGATTTTGATGAGAGTAGTAGAGGGAGTGGTAGTAGAGTTGAAGAGAGGGTAGTGCGGTCGCCAAAGGGGGGTTTTTCGAAGGAAGTGAAATCGCCTAGTTGGTCGAAGGATTCAGAGAGTGAACAATCGAAGAAGAGATCTTCTTCTTCTCCAAGGGTGTTTAGAGATGCTAAGTCAGTGTCGAAGTCACCTTCTGGGTCTAAGGATTCAGAAAGCGCACAGTCCAAAAGTGTTAGTGTTGAGATGAAGAAAACTGAAGAGCTATCGCAGCAGGTTCAGAATGGAAGTGGCAGCGAAATGGAAGAGGGGGAACTCGAACCTGAACCGGTCCCTAACTCTGAGCCCAAATCGGCTGCTAAAGATGTTGCAGCTGGAAGTGAAATCCAGCAAACCTCTGAGGACAAACAAGTTCATAAGCCGAATGAAGGCCGTTTGACTGATGCAGATGTTGTTATGGAAGAAAAACAGATGTTGGCGAGTGAGAAAAAGGCAGAGGCAGAGGCGAACACTATGGAAGATGTTGATTCTGAGGTAAAAGATGCAGAAAAAGAAGTTCATGAATTGCCTAAGACTCAAGATGTTTCAATTAAGGAAACGCCTTTTACCGAGACTGTGATTGGAACTGTTGATAAGGATAATGATAAGAAGGATGCAAGTTTGAATGGTGATGATACTCTCAAGAAAGAAACAGAGAAGAAAACAAGTAAGGAGAATGCATTGCTTAATGAAGAGGAACGCGAGGTGGACAAGGGTGTACTTAGTGGTGACAAATCTGAGATAAATGCTGAAGGCTCAACAGAGAATGCAGTTGCCGAAGTGAAGAGAGAAACAATAATGGAGAGTGTGACCAACAATACCAAGGATAAAGGAAAAAGCGTCTCGGTCACACCTGATGTTGCTCATTCTTCACAAGATAGTTTGTGGATTGATAGAGGGTCGAAAGATCTCACAACATGCCCTGTAGATGACATGGAAGGTCCTAGCACTAGAGGGTTCGAGCTTTTCTCTAGATCTCCTGTGAGAAAAGTAGAAAAGTCTTGTCGCTCGGTTCTGAAAGAGGAGAATGATGAGACTCTTGCATCTGGGCAGCTTGATCTTACCCTTAGCTTGCCAAATGTTCTGCTTCCGATAGGAGCTCAGGAGACGACAACACAAGCCCCTGGATCTCCTAGTCAAGCCCGGAGTGTTCAGTCTCTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCAATGTCATTTTCAGGTTCCCAATCACTATATCACAATCCAAGTTGTTCTCTTACGAGAAATTCAGTGGACTATGAACAATCTGTTGGCAAATCGGTTGGCAGTCGCCCCTTGTTCCAAGGATTTGATTGGCAAGCTCTATCTCAGGGTGATCCCAAGCCGAAAGAAATTCCCTCTGGTCAGAGAACTTCGATGAATGGGAATGGCTCTCTTTACCAGCCTCAAGCATCATGGGGCATTTTAGATACTCAAGCTTTGAAAGGTCATTCTAGGGCTCTGGAAGGAAGCTCAAAAATGGGCAGTGGGCTTGAAAGGCAGTTGAGTTTTCATAAGCAGCTTTCAGGACAGTCAAGACGGCATGATGATGTTCGATCTCCTACACAGAGTGTTGGGTCTCATGACAATGGATCAAATTATAGTTTTGAGAAAAAGAGGGAGGTTAAAGAAAGAAGCAGTGGTAGTCTACATCGAACTACCAGTCAGAAGGGACAAGAACAATTTCAGATGGGTGGACTTGATTTTGTTAAGACAATCATTGCAAGAATAGTTTCTGAACCTGTGCTCCCGATGTCCCGAAAGTTTCATGAAATGAATGCACAGTACATAGCGCGTCTGAAGGAGGGTATTCGAGAACTCATGCTCAATTCAGATAACCAAGGACAAATACTTGCTTTTCAAAAAGTTTTGATGAACAGGTCAGATATAGTCTTGGATGTTCTAGTGAAGTGTCACCGAGTGCAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTAACCCATTATCTTCACCTAGATGATAACATTTCATCTTCTGATTTAGCTCAAGTGTTTCTAAGCTTGAAGTGTCGGAATGTTACATGTCGAAGTCAGTTGCCTGTCGATGAATGTGATTGCAAGGTTTGTGCACAGAAGAATGGTTTTTGCAGGGAATGTATGTGTCTTGTATGTTCTAAGTTTGACAATGCCTCAAACACATGTAGTTGGGTTGGGTGTGATGTTTGTCTTCACTGGTGTCACACTGATTGTGGATTACGAGAATCTTATATTAGAAATGGGCTTACTACTGGAATTAAAGGGACTACTGAGATGCAGTTTCACTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTCTTTCAAAGTTTTGCAAAAGAGTGGTCAGCCGAATCTCTTCACAAGGAGCTTGAATATGTGAAGAGGATCTTTTCTGCTAGCAAGGATATAAGAGGGAGACAGTTGCACGAGATTGCAGATCAAATGCTACCGAGGCTGACTAAGTCGAACCTGCCTGAGGTTTTAAGACACATCATGTCTTTCCTTTCTGATTGTGATTCTTCCAAATTAGCCATGCCAACAAACTTTTCTGGGAAGGAACAAGTCAAAGAAAACAATGGGGTAGCTGGGCCCAGCCAAGAAGCTGCTTGGCTGAAATCTATTTATTCAGAAAAGCCGCCTCTATTATTAGAAAGACCTCCAAACATCCTTTCAAGATTTGACCAGAATGATAAAAGGACACTGGTGCAAGAGATGCAGCTGAGTAGTGTTCAAAAAGACTTCTGTTTTGATGAATTGGAAAGCGTAGTAAAAATCAAACATGCAGAGGCTAAAATGTTTCAATCTCGTGCTGATGATGCAAGGAGAGAAGCCGAAGGGTTGAGACGCATTGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAATATACCAGTCGACTTGCCAAATTACGGTTCTCGGAGACAGATGAATTGCGTAAACAAAAGATAGAAGAACTCCAAGCATTGGAGAGGGCACATCTGGAGTATTTGAACATGAAAAGAAGAATGGAGTCAGAGATTAAAGATCTGTTGTCCAAAATGGAAGCTACTAAAATGAACCTTGCCATGTGA 3639 0.435 MKRLRSSEDLHSYNSGGGDKNGDKNGDKIGDKNGDKNGFKDSNLSRSFSSTGQRSFYYKQENVRKGLVSSSSSRYERDRTVEEDREGSRIVRKRSDHDFDGFDRRKGFDRYSRDGGGYSGGGGSGDRNSIHRSESFSGPRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESSRGSGSRVEERVVRSPKGGFSKEVKSPSWSKDSESEQSKKRSSSSPRVFRDAKSVSKSPSGSKDSESAQSKSVSVEMKKTEELSQQVQNGSGSEMEEGELEPEPVPNSEPKSAAKDVAAGSEIQQTSEDKQVHKPNEGRLTDADVVMEEKQMLASEKKAEAEANTMEDVDSEVKDAEKEVHELPKTQDVSIKETPFTETVIGTVDKDNDKKDASLNGDDTLKKETEKKTSKENALLNEEEREVDKGVLSGDKSEINAEGSTENAVAEVKRETIMESVTNNTKDKGKSVSVTPDVAHSSQDSLWIDRGSKDLTTCPVDDMEGPSTRGFELFSRSPVRKVEKSCRSVLKEENDETLASGQLDLTLSLPNVLLPIGAQETTTQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTRNSVDYEQSVGKSVGSRPLFQGFDWQALSQGDPKPKEIPSGQRTSMNGNGSLYQPQASWGILDTQALKGHSRALEGSSKMGSGLERQLSFHKQLSGQSRRHDDVRSPTQSVGSHDNGSNYSFEKKREVKERSSGSLHRTTSQKGQEQFQMGGLDFVKTIIARIVSEPVLPMSRKFHEMNAQYIARLKEGIRELMLNSDNQGQILAFQKVLMNRSDIVLDVLVKCHRVQLEILVALKTGLTHYLHLDDNISSSDLAQVFLSLKCRNVTCRSQLPVDECDCKVCAQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGLTTGIKGTTEMQFHCIACDHPSEMFGFVKEVFQSFAKEWSAESLHKELEYVKRIFSASKDIRGRQLHEIADQMLPRLTKSNLPEVLRHIMSFLSDCDSSKLAMPTNFSGKEQVKENNGVAGPSQEAAWLKSIYSEKPPLLLERPPNILSRFDQNDKRTLVQEMQLSSVQKDFCFDELESVVKIKHAEAKMFQSRADDARREAEGLRRIALAKNEKIEEEYTSRLAKLRFSETDELRKQKIEELQALERAHLEYLNMKRRMESEIKDLLSKMEATKMNLAM 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01541 1212 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1210 IPR004082 -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 200 220 - -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 718 735 - -
Vivi5g01541 1212 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 899 919 IPR004082 -
Vivi5g01541 1212 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 827 842 IPR004082 -
Vivi5g01541 1212 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1107 1127 IPR004082 -
Vivi5g01541 1212 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 773 795 IPR004082 -
Vivi5g01541 1212 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 812 827 IPR004082 -
Vivi5g01541 1212 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1146 1168 IPR004082 -
Vivi5g01541 1212 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 853 874 IPR004082 -
Vivi5g01541 1212 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 971 990 IPR004082 -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 221 266 - -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 446 474 - -
Vivi5g01541 1212 Coils Coil 1131 1151 - -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 690 746 - -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 300 361 - -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 21 39 - -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 376 424 - -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 133 191 - -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 40 70 - -
Vivi5g01541 1212 Pfam Coiled-coil region of Oberon 1085 1200 IPR032535 -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 1 474 - -
Vivi5g01541 1212 Coils Coil 332 352 - -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 71 112 - -
Vivi5g01541 1212 Coils Coil 1175 1209 - -
Vivi5g01541 1212 MobiDBLite consensus disorder prediction 625 651 - -
Vivi5g01541 1212 Coils Coil 394 415 - -
Vivi5g01541 1212 CDD PHD_OBE1_like 892 950 IPR047578 -
Vivi5g01541 1212 Pfam PHD - plant homeodomain finger protein 862 984 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01541 Vivi-Chr5 48390603 48395419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01541 860 1009 PHD Gene Family AT5G57380 25.000 5.73e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01541 - - gmx:100817003 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01541 5 48390603 48395419 Vivi5g01541 5 48390603 48395419 ECH