Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01527 ATGCAGGAAGTTCAAGAGCCTCAACCCCAATCAACACTAGGGCAAGAAAATGCAGATGAGGTGTTTGATGAAAGTTCTGCAAATGATAAAGGTGAAACTCCGGAAGAGTTATTGAGTAGTCCTCCAAAAGTTGATTCTGAAGTTGAGGTTCTTCATGAGAAGGTTACCAAGCAAATAATTAAGGAGGGTCATGGTCAGAAACCTTCCAAGTATTCAACATGTTTCTTCCATTACAGGGCGTGGTCTGAGAACACGGAGCACAAATTTGAAGATACATGGCAGGAACAACGACCAACAGAGATGATAATAGGGAAAGAGAAAAAAGAAATGACCGGCTTGGGCATTGGGGTGGCAAGCATGAAAGCTGGGGAGCGAGCATTGCTGCGCGTGAGCTGGGAATTAGGATATGGAAAGGAGGGAAGCTTTTCTTTTCCTAATGTTCCACCCATGGCAGATTTAGTTTATGAAGTTGAGCTCATTGGTTTTGACGAAACAAAGGATGGAAAAGCTCGTAGCGATATGACTGTAGAGGAAAGGATTGGTGCAGCAGATCGGAGAAAGATGGATGGAAATGCTATGTTTCAGGAAAATAAACTAGAGGAGGCCATGCAACAGTATGAAATGGCCATAGCTTATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATAGGGATATGGCTCTGGCTGTAAAGAATCCATGCCATCTTAACACAGCAGCCTGTCTGATTAAGCTTAACCGCTATGAAGAAGCTATAGGACAATGCAGCATTGTATTGAGTGAGGATGAGGGCAATGTGAAGGCGTTGTTTAGGAGAGGTAAGGCTAGAGCAGCACTTGGGCAGACAGATGCTGCAAGGGAAGATTTTCTAAAAGCGCGTAAATATGCACCTGAAGATAAAGCAATTGCAAGAGAATTGAGGCTACTCGCTGAACACGACAAAGCTATTTATCAAAAGCAAAAAGAGATCTATAAAGGAATATTTGGACCAAGGCCTGAACCTGTACCTAAGAAAAGGAGTTGGCTTATACTTATTTGGCAGTGGTTGGTTTCAGTGTTTTATAGCTTTACAACACTCTTCAAACGTGAAAAGAACAAATCTGACTAA 1113 0.4241 MQEVQEPQPQSTLGQENADEVFDESSANDKGETPEELLSSPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFFHYRAWSENTEHKFEDTWQEQRPTEMIIGKEKKEMTGLGIGVASMKAGERALLRVSWELGYGKEGSFSFPNVPPMADLVYEVELIGFDETKDGKARSDMTVEERIGAADRRKMDGNAMFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNTAACLIKLNRYEEAIGQCSIVLSEDEGNVKALFRRGKARAALGQTDAAREDFLKARKYAPEDKAIARELRLLAEHDKAIYQKQKEIYKGIFGPRPEPVPKKRSWLILIWQWLVSVFYSFTTLFKREKNKSD 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01527 370 MobiDBLite consensus disorder prediction 1 21 - -
Vivi5g01527 370 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 71 163 IPR001179 GO:0003755
Vivi5g01527 370 SUPERFAMILY TPR-like 175 327 IPR011990 GO:0005515
Vivi5g01527 370 FunFam Peptidylprolyl isomerase 168 296 - -
Vivi5g01527 370 ProSiteProfiles TPR repeat profile. 268 301 IPR019734 GO:0005515
Vivi5g01527 370 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 67 160 IPR001179 GO:0003755
Vivi5g01527 370 Gene3D Tetratricopeptide repeat domain 165 296 IPR011990 GO:0005515
Vivi5g01527 370 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 98 352 IPR039663 -
Vivi5g01527 370 Gene3D - 39 164 IPR046357 GO:0003755
Vivi5g01527 370 SUPERFAMILY FKBP-like 33 162 - -
Vivi5g01527 370 SMART tpr_5 268 301 IPR019734 GO:0005515
Vivi5g01527 370 SMART tpr_5 183 216 IPR019734 GO:0005515
Vivi5g01527 370 SMART tpr_5 234 267 IPR019734 GO:0005515
Vivi5g01527 370 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01527 Vivi-Chr5 47455816 47458820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01527 48 336 Calmodulin-binding Proteins AT5G48570 32.770 3.82e-31 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01527 5 47455816 47458820 Vivi5g01527 5 47455816 47458820 ECH