Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01513 ATGGCATTTCACGTTGCTTGTCCAATTACATGTCGAAGAATCTGTTTCTGTGCGTTAGGGTTTCCGCGTTCTCTCAATGGAACCATCGCCAACAGCAACAGCAACAACGACGCTGCCAATGGTTTTCTCAACGACGTTTCTGTGCTCGGAGATTTCATTGCTGATGCTCGGAAAGAGGACTCTACGATCCAAGTTGCGGTTCCCAAGGTTGTGCCGCCGCCTCCTGAGGTTGTTCCGGTTAGCGGTGATTTGGTTGATGAGTCTGCGTCTATGAAAGCGAAGCGTGTTGCGCTTCAGAGGAAAGGTGCGGCGGCTATGATTGCGGCTGAGGAGTATGCGAGGAAGTTTGAGTCTGGTGATTTGCTGGATACTTCGGGAAATCTTATCGGAGAAGAACAGGGTCAATCCAATGTTAAGGTCTTTTGTCGAATGTGCAATCGCGTTGAGAGTGAAGGAAGCGAGAAAGCGAAAAAGATGCTTTCGTGCAAAAGTTGCAGTAAGAAGTACCATAGGAACTGCTTGAGAAGTTGGTCTAATAATAGAGATTTATTTCATTGGAGTTCGTGGACTTGTCGTGCTTGCCGAATATGTGAGGCTTGTAGACGGACTGGTGATCCAAGTAAGTTCATGTTTTGCAAAAGATGTGATGGTGCTTACCACTGCTACTGCCTGCAGCCTCCTCATAAGAATGTTAGTACTGGGCCCTATTTATGCCCAAAACACACAAAGTGTCACAGTTGCGCATCCAATGTCCCTGGAAATGGACTAAGTGTGAGGTGGTTTCTGGGATACACGTGCTGTGATGCATGTGGAAGATTGTTTGTGAAAGGAAATTACTGCCCTGTTTGTCTGAAGGTTTACAGAGATTCAGAATCAACACCAATGGTTTGCTGTGATAATTGCCAACGCTGGGTACATTGTCAGTGTGATAATATTAGTGATGAAAGATATCACCAATTTCAAGTAGATGGAAATCTGCAGTATACATGTCCTACTTGTCGTGGAGAATGTTATCAGGTCAAGAATCTTGAAGATGCTGTTCAAGAGCTTTGGAGGAGAAAGAATGACACAGATAGAGATTTAATTACCAGTCTGAGGGCTGCAGCTGGATTACCAACACAAGAAGAAATATTTTCTATTTCACCATATTCTGACGATGAGGATAGTGGGCCTTTAAAGTTAAAGAGTGATTCTGCACGTTCCCTTAAGTTTTCTTTTAAGAATTTTCCCAATAACTCACCTATTAAGATAAAAGATTATGGAAAGAAATCTTCAAACAAGACTGCCAAGAAAAAGGATTCTCTGTCATTCATGACTGGTAAAGTTGATGCACACTATAGTTTTGAAGGACACAGTGATGTTAAATCTTTGCATAGCTTCGATGATGATAAAAATGATGATGACCTGCAATCCCAGAGAAATGAAGGTCCTGATGTTTATTCATCACCTGCTACCGGAAGCCTGAGTCAAACTGAATTATCTTTTCCTGTCAACCGTCCAAGTATTTTGAAACGTAAGTTTGTTGATGAGGTGATGGTCAGTGATGAAGAAAGGAAAACCAGAGTTGTTCGAATTAAAAGCAATAAGGCAAATGTTTTGGATAGTGAAGAGGAGAGTGGAAAACATGGTGATAAGACTCAGAATGTAAAAGGGAAAAAGTTGGTTATAAATTTGGGAGCACGTAAGATCAATGTAGCTAGTTCTCCGCTGTCTGATAATGCAAGCTTCCAAAGAGATCAAGATCTAGTTAATGCAAATGGAAATGAAAATCTAGCTCATTTGATGAAGGGAAACAAGTATGCATTAGATAGACAGGATGGAATGGCTAGACATGTTGATGGCAAAGGAAGTAGGGTTGACTCTGGCCAATTAAAACATTTAAAGGTTTCAGGAAGAGAAGGAAATATGATCAAGTTGGGAAAAGTTAAGCCAAGTGTTTCTGAACTCAACCTTACCTCTGGTAAAGGCAATATGTCTGATGGGTGTGAAGTTGATCATTTAGAGCGATCTCACATTATGCGGGGTAAACGTAGTACTCATGGAATGAACAATCAAGTTGGATTAGATTCAACATCAAGAGGTGAAAGGGCGTATTTGGCGAGGCAGTCTGAAGGTAGCTCTGATGTATATGACGAGACACATGACAATAATCACACGCCTTCACATTCTTTGCCAAAAGATTCTAAAACTTTACTGAGATTTAAATTCAAAAGGCCTAGCATTGAAAGTCAAAATTCTCCCCATCAGGAAGAGGAGAAGACCACAGTCAAGGGTCAGAGGTCAAAAAGGAAGAGGCCTTCACCTTTCAAAGAAAAAACATTGTTTAATGACTCTGAAGGTGTTAGTCAATCTTCTGGAGACAATATAAATCATGAGAACATGGATGCAAACTGGATTTTGATGAAATTGGGAAGTGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCGGACAATTCTTGGCACAAGGGAGAGGTTACTGACACAGTTGAAGGCACCTCAAAGTTACATGTTACTTACGATGATGGAAGAGTTAGTATCTTGGAACTCAGAAAGCAGGGGGTCCGTTTTGTTCCTCAAAAGCAAAAGAGATCAAAAACATGA 2607 0.412 MAFHVACPITCRRICFCALGFPRSLNGTIANSNSNNDAANGFLNDVSVLGDFIADARKEDSTIQVAVPKVVPPPPEVVPVSGDLVDESASMKAKRVALQRKGAAAMIAAEEYARKFESGDLLDTSGNLIGEEQGQSNVKVFCRMCNRVESEGSEKAKKMLSCKSCSKKYHRNCLRSWSNNRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKNVSTGPYLCPKHTKCHSCASNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDNCQRWVHCQCDNISDERYHQFQVDGNLQYTCPTCRGECYQVKNLEDAVQELWRRKNDTDRDLITSLRAAAGLPTQEEIFSISPYSDDEDSGPLKLKSDSARSLKFSFKNFPNNSPIKIKDYGKKSSNKTAKKKDSLSFMTGKVDAHYSFEGHSDVKSLHSFDDDKNDDDLQSQRNEGPDVYSSPATGSLSQTELSFPVNRPSILKRKFVDEVMVSDEERKTRVVRIKSNKANVLDSEEESGKHGDKTQNVKGKKLVINLGARKINVASSPLSDNASFQRDQDLVNANGNENLAHLMKGNKYALDRQDGMARHVDGKGSRVDSGQLKHLKVSGREGNMIKLGKVKPSVSELNLTSGKGNMSDGCEVDHLERSHIMRGKRSTHGMNNQVGLDSTSRGERAYLARQSEGSSDVYDETHDNNHTPSHSLPKDSKTLLRFKFKRPSIESQNSPHQEEEKTTVKGQRSKRKRPSPFKEKTLFNDSEGVSQSSGDNINHENMDANWILMKLGSDAIGKRVEVHQTSDNSWHKGEVTDTVEGTSKLHVTYDDGRVSILELRKQGVRFVPQKQKRSKT 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01513 868 Pfam PHD-finger 279 334 IPR019787 -
Vivi5g01513 868 ProSiteProfiles Zinc finger PHD-type profile. 277 336 IPR019787 -
Vivi5g01513 868 CDD PHD_SF 141 194 - -
Vivi5g01513 868 ProSiteProfiles Zinc finger PHD-type profile. 139 197 IPR019787 -
Vivi5g01513 868 SUPERFAMILY FYVE/PHD zinc finger 133 197 IPR011011 -
Vivi5g01513 868 MobiDBLite consensus disorder prediction 707 736 - -
Vivi5g01513 868 FunFam PHD finger family protein 274 336 - -
Vivi5g01513 868 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 164 467 - -
Vivi5g01513 868 MobiDBLite consensus disorder prediction 457 473 - -
Vivi5g01513 868 FunFam PHD finger family protein 136 251 - -
Vivi5g01513 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 251 IPR013083 -
Vivi5g01513 868 MobiDBLite consensus disorder prediction 457 493 - -
Vivi5g01513 868 SMART PHD_3 141 195 IPR001965 -
Vivi5g01513 868 SMART PHD_3 279 334 IPR001965 -
Vivi5g01513 868 SMART PHD_3 196 242 IPR001965 -
Vivi5g01513 868 ProSitePatterns Zinc finger PHD-type signature. 142 194 IPR019786 -
Vivi5g01513 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 336 IPR013083 -
Vivi5g01513 868 Gene3D - 804 851 - -
Vivi5g01513 868 SUPERFAMILY FYVE/PHD zinc finger 278 337 IPR011011 -
Vivi5g01513 868 MobiDBLite consensus disorder prediction 744 758 - -
Vivi5g01513 868 SUPERFAMILY FYVE/PHD zinc finger 186 247 IPR011011 -
Vivi5g01513 868 MobiDBLite consensus disorder prediction 700 790 - -
Vivi5g01513 868 MobiDBLite consensus disorder prediction 776 790 - -
Vivi5g01513 868 MobiDBLite consensus disorder prediction 474 493 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi5g01513 PHD 2.4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01513 - - tpra:123921045 1454.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01513 5 47034903 47042570 Vivi5g01513 5 47034903 47042570 ECH