Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01481 ATGTCCAACAATAACCATAATCACACATTTCCAATTTCAGCTACTTTGTTGATTTTCTTGTTGCTAAATCTATGTCAAGAGAATTCAGGTTTAACACAATATGAAGCCTTGTTAAAGTGGAAACAAAGTCTCCCTCAACAACCGATTCTTGATTCATGGATCATTAACAACTCAAGTTCAACACAAACACCATGTTTATGGAGAGGTATCACTTGTGATTCAAAAGGAGATGTGACAATTCTAAACATGTCATATACTGGACTTCAAGGTAATCTTAATCACTTGAACTTATCAGTTTTTCCAAACCTTCTTCGTCTCGATCTTAAAACAAACAATCTCACCGGTGTCATACCTGAAAACATCGGCGTTCTTTCAAAACTCCAATTTCTTGATCTTTCTACTAATAATTTCACCGGAACTTTGCCTCTTTCTATTTCCAATTTGACTCAAGTTTACGAGCTTGATGTTTCGAGAAATGATGTGTCTGGTATATTAGACCGTCGTTTGTTTCCTAATAAGCCCAGTTCTAAAACTGGGCTTATCAGCATTAGGAATCTTCTTTTCCAAGATACCCTCTTGGGTGGTCCGTTACCGAACGAAATAGGGAACATAAAAAACTTGACCTTACTAGCACTCGACGCAAACAATTTCTCCGGGCCTATTCCTTCATCTTTAGGAAACTGTGAACATTTAAGCATTCTTAGATTGAATGAAAACTATTTCTCTGGACCAATTCCACCAAGTCTTGGCAAATTGACCAATCTAACCGATCTTCGGTTTTTCACCAATGAATTAAATGGCACTGTTCCACAAGAATTCGGAAACCTTTCTTCCTTGGTTGTTTTACATCTTGCTGAAAACAACTTCATTGGTGAGTTACCACCAGAAGTTTGTAAAAGTGGCAAGCTTGTGAATTTCAGTGCAGCCTATAACAGTTTCACAGGTCCAATTCCAAGAAGCCTTAGAAATTGTCCTTCTTTGTATAGAGTTAGAATTGAATACAATGAGTTAACCGGTTATGCAGATCAAGATTTCGGAGTTTATCCGAATCTTAATTACTTGGATTTCAGCTATAACAAGGTGGAAGGTGATTTATCTTCTAAGTGGGGGTCTTGCAAGAACTTACAATCACTCAATATGGCTGGTAATTCGGTGAATGGTAACATTCCAACTGAGATTTTTGAATTGAAGCAGTTACAAGAGCTTGATCTATCATTTAACCAATTATCAGGAACTATTCCTTCTCAAATTGGAAACTCTTCGAATTTGTATACTTTAAGTTTGGGTGGAAATAGGCTTTCTGGTAAGATACCAATCGAAATTGGAAAGCTTTCAAATTTGCAACATTTAGACCTTTCGATGAACATGTTGTTGGGAGAAATTCCATCTCAGATAGGAGATTGTTCCAAATTGTTGAATTTAAATTTGAGTAACAATCATTTGAATGGAACGATTCCGTTCCAAATAGGACAACTTGCATCTTTACAAGACTTTTTGGACTTGAGTTACAATTCGATTTCAGGGGAAATTCCTTCGAATATTGGCTTGCTTTCGAATTTGATAAGCTTGAATATCTCAAACAATAATTTATCAGGTTCTATTCCTGATGGAATTAGTGACATGTTGAGTTTATCAAGTCTTAACCTCTCTTACAATAATTTAGAGGGTAGTGTTCCTAAAGGTGGCAATGGCATATTCAAAGTCAATTCTTCTCATGTTATTGATTTGAGCAACAACCAAGGTCTATGTGGTGAATTCCAAGGTTTGAAACCTTGTAATGTTTCACTCATTCAACCTGGTGATGGGAGTAACAAAAAAAAGGTTTGGATTCCAATTGTTGCTTCTTTAGGAGGTGCACTTTTTCTATCATTGGTGTTTGTTGGTATATTTTTCTTGTGCTACAAGAAAAGTTCAAGAACTTCAAGAATTAAAAAGCCTTCATTCAATATACCAAATCCATTCTCAATTTGGTACTTCAACGGAAGAGTTGTATACGGCGACATAATTGAAGCTACCAATAATTTCGACGATAGGTATTGTATCGGAGAAGGAGCATTCGGGAATGTTTACAAAGCCGAACTAAAAGGAGGTCAAATATTCGCGGTGAAAAAGTTGAAATGCGACGAAGAGAATTTAGACACTGAAAGTATAAAAACATTTGAAAATGAGGTTGAAGCTATGACAGAAACAAGGCACAGAAACATTGTGAAGCTTTATGGATTTTGTTGTGAAGGGATGCATACATTTCTTGTTTATGAATATATGGATAAAGGAAGTTTGGCTGATATGTTGATGGATGATAAGAAAGCACTAGAACTTGATTGGGTTAAAAGGGTTGAGATTGTTACAGGTGTTGCAAGTGCTTTATCTTATATGCATCATGATTGTTCACCACTTTTGATTCATAGGGACATTTCAAGCAAGAATATTTTGTTATCTTCAAATCTTGAAGCTCATGTATCAGATTTTGGTACTGCAAGGTTTCTTAAGCCAAACTCACCTATTTGGACTTCATTTGCAGGCACATATGGTTATGCTGCTCCAGAGCTTGCTTACACAATGGCGGTGACAGAAAAATGCGATGTATTCAGCTTTGGTGTTTTAGCATTTGAGATTCTAACTGGAAAACACCCTGGTGATCTTGTATCTTACATACAAACTTCTAATGATCAAAAGATAGATTTCAAAGAGATTTTAGATCCTCGTCTACCTTCTCCTCCGAAGAATGTTTTGAAGGAGTTGGTTTTGGTTGGAAACTTGGCTCTTTCTTGTTTACACACAAATCCTCAATCTAGACCTACCATGAGAAGCATAGCACAATTTCTAGAAATGGAGACTACATATAATTCTTGA 2853 0.3617 MSNNNHNHTFPISATLLIFLLLNLCQENSGLTQYEALLKWKQSLPQQPILDSWIINNSSSTQTPCLWRGITCDSKGDVTILNMSYTGLQGNLNHLNLSVFPNLLRLDLKTNNLTGVIPENIGVLSKLQFLDLSTNNFTGTLPLSISNLTQVYELDVSRNDVSGILDRRLFPNKPSSKTGLISIRNLLFQDTLLGGPLPNEIGNIKNLTLLALDANNFSGPIPSSLGNCEHLSILRLNENYFSGPIPPSLGKLTNLTDLRFFTNELNGTVPQEFGNLSSLVVLHLAENNFIGELPPEVCKSGKLVNFSAAYNSFTGPIPRSLRNCPSLYRVRIEYNELTGYADQDFGVYPNLNYLDFSYNKVEGDLSSKWGSCKNLQSLNMAGNSVNGNIPTEIFELKQLQELDLSFNQLSGTIPSQIGNSSNLYTLSLGGNRLSGKIPIEIGKLSNLQHLDLSMNMLLGEIPSQIGDCSKLLNLNLSNNHLNGTIPFQIGQLASLQDFLDLSYNSISGEIPSNIGLLSNLISLNISNNNLSGSIPDGISDMLSLSSLNLSYNNLEGSVPKGGNGIFKVNSSHVIDLSNNQGLCGEFQGLKPCNVSLIQPGDGSNKKKVWIPIVASLGGALFLSLVFVGIFFLCYKKSSRTSRIKKPSFNIPNPFSIWYFNGRVVYGDIIEATNNFDDRYCIGEGAFGNVYKAELKGGQIFAVKKLKCDEENLDTESIKTFENEVEAMTETRHRNIVKLYGFCCEGMHTFLVYEYMDKGSLADMLMDDKKALELDWVKRVEIVTGVASALSYMHHDCSPLLIHRDISSKNILLSSNLEAHVSDFGTARFLKPNSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPGDLVSYIQTSNDQKIDFKEILDPRLPSPPKNVLKELVLVGNLALSCLHTNPQSRPTMRSIAQFLEMETTYNS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01481 950 SUPERFAMILY RNI-like 245 584 - -
Vivi5g01481 950 FunFam Leucine-rich repeat receptor protein kinase EMS1 174 271 - -
Vivi5g01481 950 Gene3D Ribonuclease Inhibitor 171 246 IPR032675 -
Vivi5g01481 950 Pfam Protein kinase domain 680 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01481 950 PRINTS Leucine-rich repeat signature 399 412 - -
Vivi5g01481 950 PRINTS Leucine-rich repeat signature 444 457 - -
Vivi5g01481 950 Gene3D Phosphorylase Kinase; domain 1 644 754 - -
Vivi5g01481 950 Gene3D Transferase(Phosphotransferase) domain 1 755 949 - -
Vivi5g01481 950 FunFam Nuclear pore complex protein NUP107 31 172 - -
Vivi5g01481 950 Gene3D Ribonuclease Inhibitor 247 343 IPR032675 -
Vivi5g01481 950 Gene3D Ribonuclease Inhibitor 344 594 IPR032675 -
Vivi5g01481 950 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 234 943 - -
Vivi5g01481 950 ProSiteProfiles Protein kinase domain profile. 675 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01481 950 SUPERFAMILY Protein kinase-like (PK-like) 647 944 IPR011009 -
Vivi5g01481 950 Gene3D Ribonuclease Inhibitor 31 170 IPR032675 -
Vivi5g01481 950 SMART LRR_typ_2 541 564 IPR003591 -
Vivi5g01481 950 SMART LRR_typ_2 396 420 IPR003591 -
Vivi5g01481 950 SMART LRR_typ_2 517 540 IPR003591 -
Vivi5g01481 950 SMART LRR_typ_2 276 300 IPR003591 -
Vivi5g01481 950 SMART LRR_typ_2 444 468 IPR003591 -
Vivi5g01481 950 SMART LRR_typ_2 124 148 IPR003591 -
Vivi5g01481 950 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Vivi5g01481 950 FunFam Leucine-rich repeat receptor-like protein kinase TDR 273 594 - -
Vivi5g01481 950 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515
Vivi5g01481 950 SMART serkin_6 675 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01481 950 ProSitePatterns Tyrosine protein kinases specific active-site signature. 800 812 IPR008266 GO:0004672|GO:0006468
Vivi5g01481 950 ProSitePatterns Protein kinases ATP-binding region signature. 681 704 IPR017441 GO:0005524
Vivi5g01481 950 SUPERFAMILY L domain-like 60 267 - -
Vivi5g01481 950 FunFam MDIS1-interacting receptor like kinase 2 755 948 - -
Vivi5g01481 950 FunFam Leucine-rich repeat receptor protein kinase MSP1 638 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01481 Vivi-Chr5 44845269 44848652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01481 31 848 Receptor kinase-like Gene Family AT4G08850 39.716 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi5g01481 Pkinase 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01481 - - gmx:100814345 1419.06