Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01480 ATGTCCAACAAAAACCATAATCACACATTTCCAATTTCAGTTACTTTGTTGATTTTCTTGTTGCTAAATCTATGTCAAGAAGCTTCAGGGCTAACACAATCTGAAGCCTTGTTAAAGTGGAAACAAAGTCTCCCTCAGCAACCAATTCTTGATTCATGGATCATTAACAACTCAAGTTCAACACAAACTCCATGTTCATGGAAAGGTATCACCTGTGATTCAAAAGGAAGCGTGACAGTTATAAACTTAGCATATGCTGAGCTTGAAGGTACTCTTCAACACTTAAACTTATCTGTTTTCACAAACCTTCTTCGTCTAGATCTTAACACAAACTATCTCTTCGATACCATACCTCAAAATATTGGCGTTCTTTCTAAACTCCAATTTCTCGATCTTTCTACTAATTTTCTCAATGGAACTTTGCCTCTTTCTATATCCAATTTGACTCAAGTTTACGAGCTTGATGTTTCGAGAAACGATGTGTCAGGTATATTAGACCGTCGATTGTTTCCTGATAAGCCCAGTTCTAAAACCAGACTTATTGGTATTAGGAATCTCCTTTTTCAAGATACTCTCTTGGGTGGTCCATTACCGAACGAAATAGGGAACATTCAAAACTTGACTATACTAGCACTTGACGGAAACAATTTCTCTGGGCTTATTCCTTCATCTTTAGGAAACTGTAAACATTTAAGCATTCTTGGTTTGTCTGAAAACCATTTCTCTGGCCCAATTCCACCAAGCATTGGCAAATTGACAAACCTAACTGATCTTAGGTTTTACACCAACAACTTAAATGGTACTGTGCCACAAGAATTTGGAAACCTTTCATCTTTGATTGTGTTGCATCTTGCTGAGAACAATTTCACTGGTGTGTTACCACCACAAGTTTGCAAAAGTGGCAAACTTGTGAATTTTAGTGCAGCCGATAACAGTTTCACCGGTCCAATTCCAATAAGTCTTAGAAACTGTCCTTCTTTGTATAGAGTTCGACTTGAACACAACCAGTTAACTGGTTATGCTGATCAAAATTTCGGAATTTATCCAAATCTTACTTACATGGATTTCAGCAAAAACAAAGTTCAAGGTGATTTATCTTCCAAATGGGGATCCTGCGAAAAATTGCAATTACTACGTATGGCTGGTAATTCAGTAAATGGTAACATTCCAGGAGAAATTTTTCATTTGAAACAATTACAAAAGCTTGATCTATCATCCAACCAATTATCAGGAACTATTCCTTCACAAATTGGATATTCTTTAAATTTGTATAGCTTAAATTTAGGTGGAAATAGGCTTTCTGGTAAAATACCAATTGAAATTGGAAAGCTTTCTAATTTGCAATATTTAGACCTTTCAATGAACATGTTGATGGGAGAAATTCCGATTCAGATTCGAGATTGTTCAAACTTGTTGAGTTTAAATTTGAGTAATAATCACTTGAATGGAACAATTCCATTCCAAATTGGAAGTCTTGCAGCTTTACAAATCCTTTTGGATCTAAGTTACAATTCATTTTCAGGGGAAATTCCTGCTACTATTGGTCACCTTTTAAATTTGATAAGTTTGAATATCTCAAACAATAATTTATCTGATTCAATTCCTGATGAAATTAATGGAATGTTGAGTTTGTCAAATCTTAACCTCTCTTACAATCACTTAGAGGGTAAAATTCCGAAAGGTGGCATATTCAAATCCAACTCTTCTACTTCACTTGATTTGAGCAACAACCAAGGTCTGTGTGGTGATTTCAAAGGTTTGAAACCTTGTAGTGTATCACTTAGTCAACCAAACGGTGATGGAAGTGACAAGGAAAGTGTTGTAATTCCTATTGTTGCTTCTTTAGGAGGTGCACTTTTTCTTTTACTGATATTTGTTGGCATATATTTCTTATGCTACAAGAAAAATTCAAGACCTTCAAGGCTAAAAGATTCTTCAGTGAAGATACCAAATCCATTTTCGGTTTTGTACTTCAATGGAAGAGTCATATACGAAGACATAATTGAAGCAACCAACAATTTTGACGACAAATATTGCATTGGCGGAGGAGCATTTGGAAATGTTTACAAAGCACAACTGAAAGGAGGACAAATGTTGGCGGTGAAAAAGCTGAAATACGATGACGAGAATTTAGTTATCGATAGCATAAAAACATTTGAAAATGAGGTTAAATCTATAACAGAAACAAGGCACAGGAACATTGTGAAGTTTTATGGATTTTGTTTTGCAGGGATCCACACATTTTTGGTTTATGAGTATATGGATAAAGGGAGTTTGGCTGATATGTTGACTGATGATATGAAATCAATAGAACTTGATTGGGTTAAAAGGGTTGAGATTGTTACAGGTGTTGCAAGTGCTCTTTCTTATATGCATCATGATTGTTCACCACTTTTGATTCATAGAGACATTTCAAGCAAGAATATTTTGTTATCTTCAAATCTTGAAGCTCATGTTTCAGATTTTGGTACTGCAAGGTTTCTTAAGCCAAACTCGCCTATTTGGACTTCATTTGCCGGGACATATGGTTATGCTGCTCCAGAGCTTGCTTACACAATGGCGGTGACAGAGAAATGTGATGTATTCAGCTTTGGTGTTTTAGCATTTGAGATTCTAACTGGAAAACACCCTGGTGATGTTGTTTCTTACATACAAGCATCCAATGTTCAGAAGATAGATTTAAAAGAGATTTTAGATCCTCGTCTCCCATCTCCTCCAAATAATGTTTTGAATGAATTGGAAATGGTGGAAAATTTAGCTGTTTCTTGTTTACACACAAATCCTCAGTCTAGACCTACCATGAGAAGCATTTCCCAATTGCTTATAAAAATGTAG 2835 0.3552 MSNKNHNHTFPISVTLLIFLLLNLCQEASGLTQSEALLKWKQSLPQQPILDSWIINNSSSTQTPCSWKGITCDSKGSVTVINLAYAELEGTLQHLNLSVFTNLLRLDLNTNYLFDTIPQNIGVLSKLQFLDLSTNFLNGTLPLSISNLTQVYELDVSRNDVSGILDRRLFPDKPSSKTRLIGIRNLLFQDTLLGGPLPNEIGNIQNLTILALDGNNFSGLIPSSLGNCKHLSILGLSENHFSGPIPPSIGKLTNLTDLRFYTNNLNGTVPQEFGNLSSLIVLHLAENNFTGVLPPQVCKSGKLVNFSAADNSFTGPIPISLRNCPSLYRVRLEHNQLTGYADQNFGIYPNLTYMDFSKNKVQGDLSSKWGSCEKLQLLRMAGNSVNGNIPGEIFHLKQLQKLDLSSNQLSGTIPSQIGYSLNLYSLNLGGNRLSGKIPIEIGKLSNLQYLDLSMNMLMGEIPIQIRDCSNLLSLNLSNNHLNGTIPFQIGSLAALQILLDLSYNSFSGEIPATIGHLLNLISLNISNNNLSDSIPDEINGMLSLSNLNLSYNHLEGKIPKGGIFKSNSSTSLDLSNNQGLCGDFKGLKPCSVSLSQPNGDGSDKESVVIPIVASLGGALFLLLIFVGIYFLCYKKNSRPSRLKDSSVKIPNPFSVLYFNGRVIYEDIIEATNNFDDKYCIGGGAFGNVYKAQLKGGQMLAVKKLKYDDENLVIDSIKTFENEVKSITETRHRNIVKFYGFCFAGIHTFLVYEYMDKGSLADMLTDDMKSIELDWVKRVEIVTGVASALSYMHHDCSPLLIHRDISSKNILLSSNLEAHVSDFGTARFLKPNSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPGDVVSYIQASNVQKIDLKEILDPRLPSPPNNVLNELEMVENLAVSCLHTNPQSRPTMRSISQLLIKM 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01480 944 SMART LRR_typ_2 396 420 IPR003591 -
Vivi5g01480 944 SMART LRR_typ_2 252 275 IPR003591 -
Vivi5g01480 944 SMART LRR_typ_2 204 227 IPR003591 -
Vivi5g01480 944 SMART LRR_typ_2 541 566 IPR003591 -
Vivi5g01480 944 SMART LRR_typ_2 444 468 IPR003591 -
Vivi5g01480 944 SMART LRR_typ_2 517 540 IPR003591 -
Vivi5g01480 944 SMART LRR_typ_2 124 148 IPR003591 -
Vivi5g01480 944 SMART LRR_typ_2 276 300 IPR003591 -
Vivi5g01480 944 Gene3D Ribonuclease Inhibitor 275 593 IPR032675 -
Vivi5g01480 944 Gene3D Ribonuclease Inhibitor 171 272 IPR032675 -
Vivi5g01480 944 PRINTS Leucine-rich repeat signature 399 412 - -
Vivi5g01480 944 PRINTS Leucine-rich repeat signature 444 457 - -
Vivi5g01480 944 FunFam Nuclear pore complex protein NUP107 31 171 - -
Vivi5g01480 944 Gene3D Phosphorylase Kinase; domain 1 643 753 - -
Vivi5g01480 944 ProSitePatterns Protein kinases ATP-binding region signature. 680 703 IPR017441 GO:0005524
Vivi5g01480 944 Gene3D Ribonuclease Inhibitor 31 170 IPR032675 -
Vivi5g01480 944 FunFam MDIS1-interacting receptor like kinase 2 754 944 - -
Vivi5g01480 944 SUPERFAMILY Protein kinase-like (PK-like) 648 941 IPR011009 -
Vivi5g01480 944 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Vivi5g01480 944 FunFam Leucine-rich repeat receptor protein kinase MSP1 637 753 - -
Vivi5g01480 944 Gene3D Transferase(Phosphotransferase) domain 1 754 944 - -
Vivi5g01480 944 SUPERFAMILY RNI-like 234 582 - -
Vivi5g01480 944 ProSiteProfiles Protein kinase domain profile. 674 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01480 944 SUPERFAMILY L domain-like 51 266 - -
Vivi5g01480 944 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515
Vivi5g01480 944 ProSitePatterns Tyrosine protein kinases specific active-site signature. 799 811 IPR008266 GO:0004672|GO:0006468
Vivi5g01480 944 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 174 267 - -
Vivi5g01480 944 PANTHER LEUCINE RICH REPEAT KINASE 2 225 942 - -
Vivi5g01480 944 Pfam Protein kinase domain 677 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01480 944 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 277 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01480 Vivi-Chr5 44743648 44746874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01480 12 847 Receptor kinase-like Gene Family AT4G08850 39.615 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi5g01480 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01480 - - aprc:113866080 1320.45