Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01479 ATGTCCAACAAAAACCATAATCACACATTTCCAATTTCAGTTACTTTGTTGATTTTCTTGTTGCTAAATCTATGTCAAGAAGCTTCAGGGCTAACACAATCTGAAGCCTTGTTAAAGTGGAAACAAAGTCTCCCTCAGCAACCAATTCTTGATTCATGGATCATTAACAACTCAAGTTCAACACAAACTCCATGTTCATGGAAAGGTATCACCTGTGATTCAAAAGGAAGCGTGACAGTTATAAACTTAGCATATGCTGAGCTTGAAGGTACTCTTCAACACTTAAACTTATCTGTTTTCACAAACCTTCTTCGTCTAGATCTTAACACAAACTATCTCTTCGATACCATACCTCAAAATATTGGCGTTCTTTCTAAACTCCAATTTCTCGATCTTTCTACTAATTTTCTCAATGGAACTTTGCCTCTTTCTATATCCAATTTGACTCAAGTTTACGAGCTTGATGTTTCGAGAAACGATGTGTCAGGTATATTAGACCGTCGATTGTTTCCTGATAAGCCCAGTTCTAAAACCAGACTTATTGGTATTAGGAATCTCCTTTTTCAAGATACTCTCTTGGGTGGTCCATTACCGAACGAAATAGGGAACATTCAAAACTTGACTATACTAGCACTTGACGGAAACAATTTCTCTGGGCTTATTCCTTCATCTTTAGGAAACTGTAAACATTTAAGCATTCTTGGTTTGTCTGAAAACCATTTCTCTGGCCCAATTCCACCAAGCATTGGCAAATTGACAAACCTAACTGATCTTAGGTTTTACACCAACAACTTAAATGGTACTGTGCCACAAGAATTTGGAAACCTTTCATCTTTGATTGTGTTGCATCTTGCTGAGAACAATTTCACTGGTGTGTTACCACCACAAGTTTGCAAAAGTGGCAAACTTGTGAATTTTAGTGCAGCCGATAACAGTTTCACCGGTCCAATTCCAATAAGTCTTAGAAACTGTCCTTCTTTGTATAGAGTTCGACTTGAACACAACCAGTTAACTGGTTATGCTGATCAAAATTTCGGAATTTATCCAAATCTTACTTACATGGATTTCAGCAAAAACAAAGTTCAAGGTGATTTATCTTCCAAATGGGGATCCTGCGAAAAATTGCAATTACTACGTATGGCTGGTAATTCAGTAAATGGTAACATTCCAGGAGAAATTTTTCATTTGAAACAATTACAAAAGCTTGATCTATCATCCAACCAATTATCAGGAACTATTCCTTCACAAATTGGATATTCTTTAAATTTGTATAGCTTAAATTTAGGTGGAAATAGGCTTTCTGGTAAAATACCAATTGAAATTGGAAAGCTTTCTAATTTGCAATATTTAGACCTTTCAATGAACATGTTGATGGGAGAAATTCCGATTCAGATTCGAGATTGTTCAAACTTGTTGAGTTTAAATTTGAGTAATAATCACTTGAATGGAACAATTCCATTCCAAATTGGAAGTCTTGCAGCTTTACAAATCCTTTTGGATCTAAGTTACAATTCATTTTCAGGGGAAATTCCTGCTACTATTGGTCACCTTTTAAATTTGATAAGTTTGAATATCTCAAACAATAATTTATCTGATTCAATTCCTGATGAAATTAATGGAATGTTGAGTTTGTCAAATCTTAACCTCTCTTACAATCACTTAGAGGGTAAAATTCCGAAAGGTGGCATATTCAAATCCAACTCTTCTACTTCACTTGATTTGAGCAACAACCAAGGTCTGTGTGGTGATTTCAAAGGTTTGAAACCTTGTAGTGTATCACTTAGTCAACCAAACGGTGATGGAAGTGACAAGGAAAGTGTTGTAATTCCTATTGTTGCTTCTTTAGGAGGTGCACTTTTTCTTTTACTGATATTTGTTGGCATATATTTCTTATGCTACAAGAAAAATTCAAGACCTTCAAGGCTAAAAGATTCTTCAGTGAAGATACCAAATCCATTTTCGGTTTTGTACTTCAATGGAAGAGTCATATACGAAGACATAATTGAAGCAACCAACAATTTTGACGACAAATATTGCATTGGCGGAGGAGCATTTGGAAATGTTTACAAAGCACAACTGAAAGGAGGACAAATGTTGGCGGTGAAAAAGCTGAAATACGATGACGAGAATTTAGTTATCGATAGCATAAAAACATTTGAAAATGAGGTTAAATCTATAACAGAAACAAGGCACAGGAACATTGTGAAGTTTTATGGATTTTGTTTTGCAGGGATCCACACATTTTTGGTTTATGAGTATATGGATAAAGGGAGTTTGGCTGATATGTTGACTGATGATATGAAATCAATAGAACTTGATTGGGTTAAAAGGGTTGAGATTGTTACAGATTTTGGTACTGCAAGGTTTCTTAAGCCAAACTCGCCTATTTGGACTTCATTTGCCGGGACATATGGTTATGCTGCTCCAGAGCTTGCTTACACAATGGCGGTGACAGAGAAATGTGATGTATTCAGCTTTGGTGTTTTAGCATTTGAGATTCTAACTGGAAAACACCCTGGTGATGTTGTTTCTTACATACAAGCATCCAATGTTCAGAAGATAGATTTAAAAGAGATTTTAGATCCTCGTCTCCCATCTCCTCCAAATAATGTTTTGAATGAATTGGAAATGGTGGAAAATTTAGCTGTTTCTTGTTTACACACAAATCCTCAGTCTAGACCTACCATGAGAAGCATTTCCCAATTGCTTATAAAAATGTAG 2721 0.3561 MSNKNHNHTFPISVTLLIFLLLNLCQEASGLTQSEALLKWKQSLPQQPILDSWIINNSSSTQTPCSWKGITCDSKGSVTVINLAYAELEGTLQHLNLSVFTNLLRLDLNTNYLFDTIPQNIGVLSKLQFLDLSTNFLNGTLPLSISNLTQVYELDVSRNDVSGILDRRLFPDKPSSKTRLIGIRNLLFQDTLLGGPLPNEIGNIQNLTILALDGNNFSGLIPSSLGNCKHLSILGLSENHFSGPIPPSIGKLTNLTDLRFYTNNLNGTVPQEFGNLSSLIVLHLAENNFTGVLPPQVCKSGKLVNFSAADNSFTGPIPISLRNCPSLYRVRLEHNQLTGYADQNFGIYPNLTYMDFSKNKVQGDLSSKWGSCEKLQLLRMAGNSVNGNIPGEIFHLKQLQKLDLSSNQLSGTIPSQIGYSLNLYSLNLGGNRLSGKIPIEIGKLSNLQYLDLSMNMLMGEIPIQIRDCSNLLSLNLSNNHLNGTIPFQIGSLAALQILLDLSYNSFSGEIPATIGHLLNLISLNISNNNLSDSIPDEINGMLSLSNLNLSYNHLEGKIPKGGIFKSNSSTSLDLSNNQGLCGDFKGLKPCSVSLSQPNGDGSDKESVVIPIVASLGGALFLLLIFVGIYFLCYKKNSRPSRLKDSSVKIPNPFSVLYFNGRVIYEDIIEATNNFDDKYCIGGGAFGNVYKAQLKGGQMLAVKKLKYDDENLVIDSIKTFENEVKSITETRHRNIVKFYGFCFAGIHTFLVYEYMDKGSLADMLTDDMKSIELDWVKRVEIVTDFGTARFLKPNSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPGDVVSYIQASNVQKIDLKEILDPRLPSPPNNVLNELEMVENLAVSCLHTNPQSRPTMRSISQLLIKM 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01479 906 ProSiteProfiles Protein kinase domain profile. 674 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01479 906 SMART LRR_typ_2 396 420 IPR003591 -
Vivi5g01479 906 SMART LRR_typ_2 204 227 IPR003591 -
Vivi5g01479 906 SMART LRR_typ_2 252 275 IPR003591 -
Vivi5g01479 906 SMART LRR_typ_2 541 566 IPR003591 -
Vivi5g01479 906 SMART LRR_typ_2 444 468 IPR003591 -
Vivi5g01479 906 SMART LRR_typ_2 124 148 IPR003591 -
Vivi5g01479 906 SMART LRR_typ_2 517 540 IPR003591 -
Vivi5g01479 906 SMART LRR_typ_2 276 300 IPR003591 -
Vivi5g01479 906 Gene3D Ribonuclease Inhibitor 170 274 IPR032675 -
Vivi5g01479 906 Gene3D Phosphorylase Kinase; domain 1 643 753 - -
Vivi5g01479 906 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515
Vivi5g01479 906 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 277 594 - -
Vivi5g01479 906 Pfam Protein kinase domain 781 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01479 906 Pfam Protein kinase domain 677 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01479 906 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 174 267 - -
Vivi5g01479 906 ProSitePatterns Protein kinases ATP-binding region signature. 680 703 IPR017441 GO:0005524
Vivi5g01479 906 FunFam Nuclear pore complex protein NUP107 31 171 - -
Vivi5g01479 906 PANTHER LEUCINE RICH REPEAT KINASE 2 56 234 - -
Vivi5g01479 906 PRINTS Leucine-rich repeat signature 444 457 - -
Vivi5g01479 906 PRINTS Leucine-rich repeat signature 399 412 - -
Vivi5g01479 906 Gene3D Transferase(Phosphotransferase) domain 1 762 906 - -
Vivi5g01479 906 Gene3D Ribonuclease Inhibitor 31 169 IPR032675 -
Vivi5g01479 906 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Vivi5g01479 906 SUPERFAMILY RNI-like 72 270 - -
Vivi5g01479 906 SUPERFAMILY Protein kinase-like (PK-like) 659 901 IPR011009 -
Vivi5g01479 906 Gene3D Ribonuclease Inhibitor 277 593 IPR032675 -
Vivi5g01479 906 SUPERFAMILY RNI-like 234 582 - -
Vivi5g01479 906 FunFam Leucine-rich repeat receptor protein kinase MSP1 637 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01479 Vivi-Chr5 44743647 44746874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01479 12 809 Receptor kinase-like Gene Family AT4G08850 36.831 1.34e-172 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi5g01479 Pkinase 1.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01479 - - aprc:113866080 1241.1