Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01450 ATGGCTGAATACGAAGAAGACGAAAGATACGACGGGAACGGCGCCGGCGCCGGAGGAGGAGAAGCCGGAGGAGAAGGAGAAGGAGGAGAGGATCTTGACACCACTCATCCCTATCCTTCTTCTGCATCTTCTCCTCAACCTCTCGATCAACCTGTCTCCAAATCTCGCCATGAATCTCGTGAATATGATAGAGAATCTTCGAGAAGCAGAGAAAAGGAACGAGAGAAAGATAGGAAAAGAGATAGGGATAGACCCAGAGATAGAGACAGAGAGAGGGATCGTGGTGAAGGGGAGAAGGAAAGGGATCCTCACCACAGAGACTATCGACACCGTGACAGAAAGGATAGGGAAAGGGGTAGGGATAGAGATAGGGATGATGGAGATTCTCACAGAAGTCGTGACCGTGACCATGACAGAAGAGGAAGAGGGGATTATGATCGAGAGGAAAGGCATAAACGTAGGTCTCGGTCTATTTCTCCGTCTAGAGATAGATCTGAGCATGGAACAAGGTCACGTTCTCGCTCGAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCCCCCCCTGCTTCTGCAATGTTAGCTGGTGCTGCCGCTGTTACAGTATGGAAAAAAGTTCATATCAAATTGCATGCTGTTATCTGGGCAATGTTGGGCTACTTGCCCCAATGTGCTGACAATGGGTGTGAGCCGACATCTGTAGCTTTTATGTCCATGGAGGAATCAATGCACCGGTATTTGGTGGGCCTTGTTCGTCTTCAACTGGAAACTATATCTACTTTGGTAGACATTACTACACCAAATCCTACAATTCCTGGAGTGTTGCAAAACATGTTTCCAATGGCTACTAATCAGATGCAGCAGTTCAGTGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGAAGGGTGTATGTTGGTGGACTCCCTCCGACAGCCAATGAGCAGTCTGTTGCTATTTACTTCAGCCAGGTCATGGCTAAGATTGGAGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAATTCGCCTTTGTTGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTCAAAGTTAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGTCAACCTAACCCAAACCTAAACCTCGGCGCTGTTGGTTTAACCCCTGGGTCAGCTGGTGGACTTGAAGGCCCTGATCGCATTTTTGTAGGTGGACTTCCGTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTAGAAACTTTTGGTCCTCTTCGGGGTTTCGATCTGGTAAAAGATAGAGAAACAGGAAATTCAAAGGGTTATGCATTTTGTGTTTACCAAGATCTCGCAGTTACAGATATTGCATGTGCAGCTCTAAATGGAATTAAGATGGGAGATAAGACTCTCACTGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCACTGCAGAAACTTATATTTCAGCCAGCATTAGTGGCTACAAAGGTGGTGTGTCTAACCAACGCAGTTTCTCCTGACGAGCTCAAAGAAGATGAGGACTTTGAAGAAATTATCGATGACATGAGACAGGAATGCTCCAAATTTGGTACTTTGGTGAATGTTGTGATCCCTCGCCCACAACCAGATGGGGATTTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATACTGAGGGTGCTACAAAAGCCTGCACTGGGTTGAATGGGAGAAAATTCGGTGGAAATGAAGTAATAGCCGTCTTCTATCAAGAAAACAAGTTTGCTCAGGGGGATTATGAAGGCTAA 1929 0.4598 MAEYEEDERYDGNGAGAGGGEAGGEGEGGEDLDTTHPYPSSASSPQPLDQPVSKSRHESREYDRESSRSREKEREKDRKRDRDRPRDRDRERDRGEGEKERDPHHRDYRHRDRKDRERGRDRDRDDGDSHRSRDRDHDRRGRGDYDREERHKRRSRSISPSRDRSEHGTRSRSRSKSKRVSGFDLAPPASAMLAGAAAVTVWKKVHIKLHAVIWAMLGYLPQCADNGCEPTSVAFMSMEESMHRYLVGLVRLQLETISTLVDITTPNPTIPGVLQNMFPMATNQMQQFSALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIYFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVSPDELKEDEDFEEIIDDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDTEGATKACTGLNGRKFGGNEVIAVFYQENKFAQGDYEG 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01450 642 CDD RRM1_U2AF65 307 389 - -
Vivi5g01450 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 428 506 IPR000504 GO:0003723
Vivi5g01450 642 MobiDBLite consensus disorder prediction 53 170 - -
Vivi5g01450 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 430 499 IPR000504 GO:0003723
Vivi5g01450 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 384 IPR000504 GO:0003723
Vivi5g01450 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 565 625 IPR000504 GO:0003723
Vivi5g01450 642 Gene3D - 536 641 IPR012677 -
Vivi5g01450 642 SMART rrm1_1 429 502 IPR000504 GO:0003723
Vivi5g01450 642 SMART rrm1_1 542 628 IPR000504 GO:0003723
Vivi5g01450 642 SMART rrm1_1 309 387 IPR000504 GO:0003723
Vivi5g01450 642 Gene3D - 419 524 IPR012677 -
Vivi5g01450 642 FunFam U2 snRNP auxiliary factor large subunit 536 641 - -
Vivi5g01450 642 PANTHER RNA-BINDING PROTEIN 42 640 - -
Vivi5g01450 642 CDD RRM2_U2AF65 428 504 - -
Vivi5g01450 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 391 IPR000504 GO:0003723
Vivi5g01450 642 SUPERFAMILY RNA-binding domain, RBD 429 633 IPR035979 GO:0003676
Vivi5g01450 642 Gene3D - 303 404 IPR012677 -
Vivi5g01450 642 SUPERFAMILY RNA-binding domain, RBD 291 394 IPR035979 GO:0003676
Vivi5g01450 642 FunFam U2 snRNP auxiliary factor large subunit 303 404 - -
Vivi5g01450 642 MobiDBLite consensus disorder prediction 1 183 - -
Vivi5g01450 642 MobiDBLite consensus disorder prediction 36 52 - -
Vivi5g01450 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 541 633 IPR000504 GO:0003723
Vivi5g01450 642 SMART rrm2_1 542 628 IPR003954 GO:0003676
Vivi5g01450 642 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 269 640 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vivi5g01450 642 CDD RRM3_U2AF65 540 628 - -
Vivi5g01450 642 FunFam U2 snRNP auxiliary factor large subunit 405 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01450 Vivi-Chr5 41350724 41356436 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01450 430 621 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 3.50e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01450 K12837 - gmx:100793801 684.871