Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01445 ATGAACACAATTAACCAAAGAAAGAAAACCATGGGACGCAAGAAAATCGAAATCAAGAAAGTCGAAAAAGAAGCCAACAAACAAGTCACATTCTCGAAACGAAGATCTGGTTTGTTCAAAAAAGCTTGTGAACTTTGCATCTTATGTGATGTTCATCTCGACATCATTGTGTTTTCGCCTGCCGATAAAATATTTCGGTGCGGTTGCAGTCAACCGAGCACTGACGCGGTCCTCAAAAGTTACATCCGTGGAACCACGGAGTTTGAAGATCAGCAGTTGATGGGAGATTCTTTGATCTATGAAGAGTATAATAAGGAGTATGAAGAGGCATTAAAGGTCTTGCAAATGGAAAAGAAGAAACTTGCGGATATTGAAAATTTGGCTAGGGTTTCGAAGAGAGGTGCATGGTGGAATGACTCTATTGATGATATGAATGGTGAAGAACTTGAATATTTTATGATGTCGATTTTTGAGTTAAAGAAGAACTTGCTGAAAAAGAACATGAACATCTCATGA 516 0.3837 MNTINQRKKTMGRKKIEIKKVEKEANKQVTFSKRRSGLFKKACELCILCDVHLDIIVFSPADKIFRCGCSQPSTDAVLKSYIRGTTEFEDQQLMGDSLIYEEYNKEYEEALKVLQMEKKKLADIENLARVSKRGAWWNDSIDDMNGEELEYFMMSIFELKKNLLKKNMNIS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01445 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 66 IPR002100 GO:0003677|GO:0046983
Vivi5g01445 171 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Vivi5g01445 171 Coils Coil 100 127 - -
Vivi5g01445 171 Gene3D - 23 120 IPR036879 GO:0003677|GO:0046983
Vivi5g01445 171 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Vivi5g01445 171 PANTHER MADS BOX PROTEIN 13 165 - -
Vivi5g01445 171 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Vivi5g01445 171 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Vivi5g01445 171 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Vivi5g01445 171 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01445 Vivi-Chr5 41246672 41247187 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01445 10 164 Type I MADS-box Gene Family AT2G24840 39.375 2.66e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi5g01445 SRF-TF 1.5e-20 No_clan