Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01443 ATGAATACAATTAACCAAAGAAAGAAAACCATGGGACGCAAGAAAATCGAAATCAAAAAAGTCGAAAAAGAAGCCTACAAACAAGTCACATTCTCGAAACGAAGATCTGGTTTATTCAAAAAGGCTTGTGAACTTTGCATCTTATGTGATGTTCATCTCGATATCATTGTGTTTTCGCCTGCGGATAAAGTATTCTATTGCGGTTTCAATCAACCGAGCACTGACGCGGTCCTTAAAAGTTACATCCGTGGAACCACGGAGTTTGAGGATCAGAAGTTGGTGGGAGATTCTTTGTTATATGAAGAGTATAATAGGGAATATGAAAAGGCACTAAAGATGTTGCAAATGGAAAAGAAGAAACTTGCAGATATTGAGAATTTGACTAGGGATTCTAATAGAGTTGGATGGTGGAATGATTCTATTGATGATATGAGCAGTGAGCAACTTGAACATTTTATGATGTCGATTTTTGAATTAAGGAAGAACTTGCTGAAAAAGAACATGAACATCTAA 513 0.3626 MNTINQRKKTMGRKKIEIKKVEKEAYKQVTFSKRRSGLFKKACELCILCDVHLDIIVFSPADKVFYCGFNQPSTDAVLKSYIRGTTEFEDQKLVGDSLLYEEYNREYEKALKMLQMEKKKLADIENLTRDSNRVGWWNDSIDDMSSEQLEHFMMSIFELRKNLLKKNMNI 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01443 170 ProSiteProfiles MADS-box domain profile. 11 65 IPR002100 GO:0003677|GO:0046983
Vivi5g01443 170 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
Vivi5g01443 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 65 IPR002100 GO:0003677|GO:0046983
Vivi5g01443 170 Gene3D - 24 120 IPR036879 GO:0003677|GO:0046983
Vivi5g01443 170 Coils Coil 100 127 - -
Vivi5g01443 170 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Vivi5g01443 170 PANTHER MADS BOX PROTEIN 13 165 - -
Vivi5g01443 170 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Vivi5g01443 170 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Vivi5g01443 170 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01443 Vivi-Chr5 41228740 41229252 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01443 9 164 Type I MADS-box Gene Family AT2G24840 39.130 2.26e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi5g01443 SRF-TF 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01443 - - cam:101502875 199.134