Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01435 ATGGTTGTGGTGATTAACGAAATGCCTAAAAGAAAGAAAGAGCAACATCATGATGATGATGATGACAATGACTCATTGTCACATAATAATAAGAAACCTCGTCGTGTGGTTTGGTCTGATGATCTCCATGCAAAGTTTGTTGATGCTGTTAACCTTATTGGCATTTCAAATTCAAAGGTTGTTCCGAGTAAAATAGTTGCTTTAATGAATGTTGATGGAATTACTACCTCTCATGTCGCTAGCCATCTCCAGAAATATAGACACAAAAAGAAAAAGGCTGAACATCAAGCTGATAGAGATAGGGTTCCTTCAACAAAGATTCTTCAGCCTACTCAATCTCAAAACATCATCAACACCTCCTTTAACATCCCTCCACCATCATACAAGTTTCATGCAAATCAAAACTCAACTTTACTCCTCCCTATCAAAAAGCCTGTCCATCAATCTCACACACAAATGTACTCTCCAACCGGTTTCAACATGAATGGGGTTACGCCTTCAACACTAATTCAATCTCAATATATCAACAACCATCCACCACCATCCACTTTTCCTACATATCATTACGCCTCTAGTGTTCCAACTCCACTTGGATTTCCAACGACCTTCGACTTCCATGATGTAGGGACATTTGATGGATCATCTGCTTCTTCAACACTCATTCAACCTATCAACACCTCGTCGTCAATCATCCATCCACCACCGTACAAGTCTCCAATATATCATCAAAGCCCTACTTTTCCAACTGATGTTAACCAATCTACAACTCTACTTGGATTTCCAACAACATCCCACTTCCATGATGACATTAGGGCTACTAACTGCCCTTTTGTTGGACCTTCTTCAAAAAGTACAAGCATTTTGGATTATGAAGATCTGAGAAGGGAACCTCAGCTACTTCCGTTTCCCCACAATTCTTTGCCGGTATTGGAGTCTCACAAAACAAGTCAAAATAGTCCAATGAACAATTCACAGCAGGCACATAATGTAGAGCCAATTATTGTTGGATCATCTGTTTCTTTGGAAGACACAAACAATAATCTGTGGAATGATGATACTTTTATTGACTTTTCGGTTGAAGAAACAGATCCTCAGACTTTAGAGGACATTAGAAAGATGGGGGAAGGCATAGAAGATGATGATCTCCTTAACTCTTGGAAGGCTTTCTAG 1170 0.394 MVVVINEMPKRKKEQHHDDDDDNDSLSHNNKKPRRVVWSDDLHAKFVDAVNLIGISNSKVVPSKIVALMNVDGITTSHVASHLQKYRHKKKKAEHQADRDRVPSTKILQPTQSQNIINTSFNIPPPSYKFHANQNSTLLLPIKKPVHQSHTQMYSPTGFNMNGVTPSTLIQSQYINNHPPPSTFPTYHYASSVPTPLGFPTTFDFHDVGTFDGSSASSTLIQPINTSSSIIHPPPYKSPIYHQSPTFPTDVNQSTTLLGFPTTSHFHDDIRATNCPFVGPSSKSTSILDYEDLRREPQLLPFPHNSLPVLESHKTSQNSPMNNSQQAHNVEPIIVGSSVSLEDTNNNLWNDDTFIDFSVEETDPQTLEDIRKMGEGIEDDDLLNSWKAF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01435 389 MobiDBLite consensus disorder prediction 7 32 - -
Vivi5g01435 389 SUPERFAMILY Homeodomain-like 32 92 IPR009057 -
Vivi5g01435 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 91 IPR017930 -
Vivi5g01435 389 FunFam Two-component response regulator 28 94 - -
Vivi5g01435 389 MobiDBLite consensus disorder prediction 1 32 - -
Vivi5g01435 389 Gene3D - 29 93 - -
Vivi5g01435 389 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 15 325 IPR044841 GO:0003700|GO:0006355
Vivi5g01435 389 NCBIfam myb-like DNA-binding domain, SHAQKYF class 34 90 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01435 Vivi-Chr5 41006288 41007632 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01435 10 87 Response Regulator Gene Family AT3G16857 56.410 4.07e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi5g01435 None None None