Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01434 ATGGCTTCGGTGATTAACGAAATGCCTAAAAGAAAGAAAGAGCAACATCATGATGATGATGACAATGACTCATTGTCGTCACATAATAATAAGAAACCTCGTCGTGTGGTTTGGTCTGATGATCTTCATGCAAAGTTTGTTGATGCTGTTGATGTACTTGGCATTGCAAATTCAAAGGTTGTTCCGAGTAAAATAGTTTCTTTAATGAATGTTGATGGAATTACTACCGCTCATGTCGCTAGCCATCTCCAGAGATACAGACTTCGTAACAAAGAGGCTGCACATGAAGCTGATAGAGATAGGGTTCCTTCAACAAAGATTCTTCAGGCTACTGATCAATCTCAAAACATCACCAACAGCTCCTTTAACAAAAAGCATGTCCATCAATCTCACACACAAATGTACTCTCCAACCGGTTTCAACATGAGTGGAGTCTCTCCTTCAACACTAATTCAATCTCAAAATATCAACATCCATCCACCACCATCCACTTTTCCTAGAAATCATTACACCTCTAGTGCTCCAACTCATGTTAACCAATATACTACTCCACTTGGATTTCCAACAACCTTCGACGACTTCCATGGATCATCTGCTTCTTCAACACTCATTCAACCTATTCAATCTCAAGCTATCAACAACACCTCGTCAATCATCCATTCACCACCATCCACATTTCCTATATATCATCACACCTCTACTTTTCCAACTATTGGTAACCAATCTACAACTCCACTTCGATTTCCAACAACCTTCGACAACTTCCATAATGTAGGAGGGACATTTCTTGGATCTTCTTCAACACTCATTCAACCTAATCAATCTCAAGCTATTAACAACAGCTCGTCAATCATCCATCCAACACCGTACAAGTTTCCAATATATCATCAAAGCCCTACTTTTCCAACTCTTGTTAACCAATCTACAACTCCCCTTGAATTTCCAACAACATCCCACTTCCATGACATTAGGGCTACTAACTACCCTTTTGTTGGACCTTCTTCAAAAACCACAAGAAGCATTTCGGATTATGAAGATCTGATAAGGGAACCTCAGCTACTTCCGTTTCCCCACAATTCTTTGCCAGTGTTGGAGTCTCACAAAACAAGTCAAAATAGTCAAATGAATTCACAGCATGCACATAATGTAGAGCCAATTATTGTTGGATCATCTGCTTCTTTGGAAGACACAAACTATAATCTGCGGAATGATGATAGTTTTATTGACTTTTCCGCTGAAGAAACAGATCCTCAGACTTTAGAGGACATTAGAAAGATGGGGGAAGGCATAGAAGATGATGATCTCCTTAACTCTTGGAAGCGCTTTCTAGAAGAGGATGTCACTAATCTTATGTGA 1356 0.3953 MASVINEMPKRKKEQHHDDDDNDSLSSHNNKKPRRVVWSDDLHAKFVDAVDVLGIANSKVVPSKIVSLMNVDGITTAHVASHLQRYRLRNKEAAHEADRDRVPSTKILQATDQSQNITNSSFNKKHVHQSHTQMYSPTGFNMSGVSPSTLIQSQNINIHPPPSTFPRNHYTSSAPTHVNQYTTPLGFPTTFDDFHGSSASSTLIQPIQSQAINNTSSIIHSPPSTFPIYHHTSTFPTIGNQSTTPLRFPTTFDNFHNVGGTFLGSSSTLIQPNQSQAINNSSSIIHPTPYKFPIYHQSPTFPTLVNQSTTPLEFPTTSHFHDIRATNYPFVGPSSKTTRSISDYEDLIREPQLLPFPHNSLPVLESHKTSQNSQMNSQHAHNVEPIIVGSSASLEDTNYNLRNDDSFIDFSAEETDPQTLEDIRKMGEGIEDDDLLNSWKRFLEEDVTNLM 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01434 451 MobiDBLite consensus disorder prediction 7 32 - -
Vivi5g01434 451 SUPERFAMILY Homeodomain-like 32 92 IPR009057 -
Vivi5g01434 451 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 295 IPR044841 GO:0003700|GO:0006355
Vivi5g01434 451 Gene3D - 29 92 - -
Vivi5g01434 451 MobiDBLite consensus disorder prediction 1 32 - -
Vivi5g01434 451 FunFam Two-component response regulator 28 94 - -
Vivi5g01434 451 NCBIfam myb-like DNA-binding domain, SHAQKYF class 34 89 IPR006447 GO:0003677
Vivi5g01434 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 91 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01434 Vivi-Chr5 41000366 41001879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01434 10 88 Response Regulator Gene Family AT3G16857 51.899 2.03e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi5g01434 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01434 - K14491 vvo:131604558 893.649