LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g01425	ATGTCGCTCAACATGAAAACCCTAACCCAAGCTCTAGCAAAAACCGCAGCAGTAATCGAGAAAAGGGTGCAAACAACGGTGCAGGAGGTAACCGGTCCGAAGCCACTTCAGGACTACGAGCTTCTCGATCAGATCGGTTCGGCCGGACCGGGTTTAGCCTGGCGACTTTATTCGGCCCGGGCTCGGGATCCGTCGCGGCAGCATCAGTATCCTGTTGTGTGCGTTTGGGTGTTGGATAAACGGAGTTTGTCGGAGGCGAGAATGCGGGCGGGGTTGACGAAAGCGGCGGAGGATTCGTTTTTGGATTTGATTCGGACGGATGCGGGGAAGCTTGTTAGGCTTAGGCATCCTGGAGTTGTGCATGTTGTTCAGGGACTTGATGAGAGTAAGAACGCGATGGCGATGGTCACGGAGCCGTTGTTTGCTTCTGTTGCGAATACGCTTGGGTGTCTTGATAATGTTGCTAATGTTCCTAAGGATCTTAGGGGAATGGAAATGGGATTGTTGGAGGTGAAGCATGGTTTACTTCAGTTGGCGGAATCGTTGGATTTTCTTCACAATCAGGCTCATCTTATTCATAGAGCTATATCACCTGAGAATGTTTTTATCACATTGAGCGGAGCCTGGAAACTTGGTGGATTTGGTTTTGCAATTCCTGCTTCGCAGAACCATGGCGAGTTATCTAATCAGCAAGCCTTCCATTATGCTGAATATGACGTTGAAGACTCTATTTTGCCACTTCAGCCATCGATCAATTACACTGCTCCCGAGATGGTGAGGAGCACTGCTTCTTCAGCTGGGTGCTATTCTGATATTTTCAGTTTTGGATGCCTTGCCTACCATTTGATTGCTCGCAAGCCTTTGTTTGACTGCCACAACAATGTGAAGATGTACATGAATACCTTGACTTACTTATCCAGTGATGCTTTCTCATCTATCCCATCGGAACTGGTTCCTGACTTGCAAAGGATGCTCTCTTCAAATGAATCTTACAGGCCAAGTGCGATGGATTTCACAGGCTCACAGTTTTTTCGGAATGACACTAGGTTACGTGCTCTGCGCTTCTTGGACCACATGCTTGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCCTTGTCAGATATGTGGAAAGATTTTGATTCCCGTGTATTGCGATACAAGGTCCTTCCACCACTTTGTGCAGAACTTAGGAATGTAGTGATACAGCCAATGATTCTACCAATGGTTCTGACCATTGCAGAGTCTCAGGACAAGAATGATTTTGAGCAATCAACACTTCCAGCCCTTGTCCCTGTCTTAAGCACTGCTTCTGGTGACACAATGCTACTGCTTCTGAAGCATGCTGATCTAATAATAAACAAGACTACTCAAGAACATTTAATTTCACATGTTCTTCCAATGATTGTTCGGGCCTATGATGATAATGATGCACGTTTACAAGAAGAGGTCCTGAAAAAGACTGTATCCCTCGCCAAACAACTTGATCCCCAGCTGGTGAAACAAGTGATTTTACCCCGTGTTCATGGACTAGCACTCAAAACAACGGTTGCCGCGGTTAGAGTCAACGCTTTGCTGTGCCTAGGAGAAATGGTTAACCGACTTGATAAAAATGCTGTCCTGGAAATCTTGCAAACTATTCAGCGCTGTACTGCTGTTGACCATTCTCCTCCAACCCTTATGTGTACCCTTGGGGTTGCAAATTCTATTTTTAAGCAGTATGGAGTAGAATATGTTGCTGAACATGTTCTTCCATTGCTTATGCCACTCCTGACTGCTCAACAACTCAATGTTCAACAGTTTGCCAAATATATGCTTTTTGTCAAGAATATACTCCAGAAGATAGAAGAGAAGCGGGGAGTTGTTGTGACTGATTCTGGACTCCCAGAGGTAAAATTATCTCCTACAGTGAATGGCCTTCAGGTTGATGCTTCGAGGACAATGAACAGCACTATTGCTACTCCAACGAAAAGCAGCTCCTCTTGGGATGCAGATTGGGGTCCTAAAACAGCGAGAGCCGCCAATTATGTTACGAATCCTACTAATACATCTAGTCAGCCAGTGATAGGAAACCCTGTGGGTCAAGTAGCATCTTTACAAAATCCTTTGTCCTTATCTGGTGTATCTAATCAACAGACAGCCAAATCATGTCCTTCAGTAGATATAGAGTGGCCGCCCCGTGCATCTTCAGGAGTTACCTCACAATTTGGTGATACCGAAAGGCAAACAGTTGCAGCAGGAACCTCATCCACATCTAATCATGAAGATGATGATCCTTTTGCCGACTGGCCTCCGCGCACTAGTGGCCCATTATCTGGTGGATTTGGAAATTCCAACAATGGTACTTCAGGAATGCCACTAAACAAATTAGGGCATAATTCAATGACAAGCAATTCAAGCAATCTTCAAGCCAGCAACAATTGGTCTGTCAACCCCCAAAGTTCCCTGGAGTCTATCAGTTTGAACACAAGGAATGCTAGTTCATCTATTAGTAACCCGAATAATGGCTTTCAACCTCAGAGTCCTATTGGGCTCCTAAAACAAAGCCAGGCCTTTCCAGCATCGAATGTTGTTTCGTCATCATATAATAACGTTAAATCTACCGATCTTGGATCAATATTTTCTTCCAACAAGAATGAACAAATTGCACCTAGACTTGCCCCACCCCCTTCAACCACAGTGGGTAGAGGGCGGGGAAGAGGGAGGGGTGCTACTTCAACCAAACAGCCCTCTCATACAAAGTCAAGCACTGAACAGCCACACCTTTTGGATTTGTTGGGGTAA	2787	0.4525	MSLNMKTLTQALAKTAAVIEKRVQTTVQEVTGPKPLQDYELLDQIGSAGPGLAWRLYSARARDPSRQHQYPVVCVWVLDKRSLSEARMRAGLTKAAEDSFLDLIRTDAGKLVRLRHPGVVHVVQGLDESKNAMAMVTEPLFASVANTLGCLDNVANVPKDLRGMEMGLLEVKHGLLQLAESLDFLHNQAHLIHRAISPENVFITLSGAWKLGGFGFAIPASQNHGELSNQQAFHYAEYDVEDSILPLQPSINYTAPEMVRSTASSAGCYSDIFSFGCLAYHLIARKPLFDCHNNVKMYMNTLTYLSSDAFSSIPSELVPDLQRMLSSNESYRPSAMDFTGSQFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFEQSTLPALVPVLSTASGDTMLLLLKHADLIINKTTQEHLISHVLPMIVRAYDDNDARLQEEVLKKTVSLAKQLDPQLVKQVILPRVHGLALKTTVAAVRVNALLCLGEMVNRLDKNAVLEILQTIQRCTAVDHSPPTLMCTLGVANSIFKQYGVEYVAEHVLPLLMPLLTAQQLNVQQFAKYMLFVKNILQKIEEKRGVVVTDSGLPEVKLSPTVNGLQVDASRTMNSTIATPTKSSSSWDADWGPKTARAANYVTNPTNTSSQPVIGNPVGQVASLQNPLSLSGVSNQQTAKSCPSVDIEWPPRASSGVTSQFGDTERQTVAAGTSSTSNHEDDDPFADWPPRTSGPLSGGFGNSNNGTSGMPLNKLGHNSMTSNSSNLQASNNWSVNPQSSLESISLNTRNASSSISNPNNGFQPQSPIGLLKQSQAFPASNVVSSSYNNVKSTDLGSIFSSNKNEQIAPRLAPPPSTTVGRGRGRGRGATSTKQPSHTKSSTEQPHLLDLLG	928

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g01425	928	SMART	serkin_6	39	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi5g01425	928	ProSiteProfiles	HEAT repeat profile.	466	503	IPR021133	-
	Vivi5g01425	928	MobiDBLite	consensus disorder prediction	729	755	-	-
	Vivi5g01425	928	MobiDBLite	consensus disorder prediction	825	844	-	-
	Vivi5g01425	928	MobiDBLite	consensus disorder prediction	877	928	-	-
	Vivi5g01425	928	MobiDBLite	consensus disorder prediction	905	921	-	-
	Vivi5g01425	928	PANTHER	SCY1-RELATED S/T PROTEIN KINASE-LIKE	36	916	-	-
	Vivi5g01425	928	Gene3D	-	348	621	IPR011989	-
	Vivi5g01425	928	CDD	PK_SCY1_like	45	346	-	-
	Vivi5g01425	928	Pfam	Protein kinase domain	108	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g01425	92	335	AGC Kinase Gene Family	AT3G10540	23.077	3.13e-09	58.5

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	SCY1_SCYL2	Vivi5g01425		Pkinase	5.6e-20	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g01425	K17541		-	gmx:100796211	1465.67

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