Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01413 ATGGCGGCAATGATTAACGGAATGGCTAAAAGGAAGAAACAACAAGATGACTCATTGTCGCATAACAAGAGGAAAGCACGTCGCATGGTTTGGTCTGATGATCTTCATGCAAAGTTTGTTGATGCTGTTAATGTACTTGGCATTGCAGAGGCTGTTCCGAGAAAAATAATAGCTTTAATGAATGTTGAAGGAATTACTACCTCTCATGTCGCTAGCCATCTTCAGAAATATAGACTCCGTATGAAAAAGGCTGTTGACAAGGTTCCTTCAACACTGATTCAGCCTGCTCAATCTCAATACATCAACATTCATCCATCATACAAGTTTCCTGCAAATCAAACCTCACCTTTATTCCTCCCTAACAAACTGGCTGTCCATCAATCTCACTCACAAATTTATTCTCCAACCGGTTTCAACATGAGTGGACCGAGTCCTTCAACACTAATTCAATCTCAGAATATCAACAACAGTTCGTCAATCCTCCATCCACCGCCGTCCATCTCCTTTCCTATATATCATCAAACCTCTACGTTTCCAACTCTTGTTAACCAATATACTACTCCACTCGACTTCCATGACAGTAGGGCTACTAACTTCCCTTTACAAATCTCAAATCATCCTTTCTTGTTTCAAATGAACTCACATGATGTTGCTGCTTCTTCAAAATGCACAAGCATTTGGGATTATGATTGGTATCAAAAATACATGAAAAGGGAGCCTCAGTTACTTCAATTTCCCCACAATTCCTTGCCGGTTTGGGAGACTTACAAAACAAGTCAAAATAGTCAAATGAAGAATTCACAGCAGGTACATAATGTAGAGCCAATTATTGTTGGATCATCTGCTTCTTTGGAAGACACAAACATCAATATTTCGGATTATAATCGGTGTGATGATGATAGTCTTATTGACTTTTCGGTTGAAGAAACAGATCCTAATTACTTTAGCGGATATTACAAAGATGCAGGGATGCATAGAAGAAGAGGATCTCATTAA 996 0.3896 MAAMINGMAKRKKQQDDSLSHNKRKARRMVWSDDLHAKFVDAVNVLGIAEAVPRKIIALMNVEGITTSHVASHLQKYRLRMKKAVDKVPSTLIQPAQSQYINIHPSYKFPANQTSPLFLPNKLAVHQSHSQIYSPTGFNMSGPSPSTLIQSQNINNSSSILHPPPSISFPIYHQTSTFPTLVNQYTTPLDFHDSRATNFPLQISNHPFLFQMNSHDVAASSKCTSIWDYDWYQKYMKREPQLLQFPHNSLPVWETYKTSQNSQMKNSQQVHNVEPIIVGSSASLEDTNINISDYNRCDDDSLIDFSVEETDPNYFSGYYKDAGMHRRRGSH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01413 331 FunFam Two-component response regulator 21 84 - -
Vivi5g01413 331 Gene3D - 22 84 - -
Vivi5g01413 331 SUPERFAMILY Homeodomain-like 25 83 IPR009057 -
Vivi5g01413 331 NCBIfam myb-like DNA-binding domain, SHAQKYF class 27 80 IPR006447 GO:0003677
Vivi5g01413 331 MobiDBLite consensus disorder prediction 10 24 - -
Vivi5g01413 331 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 260 IPR044841 GO:0003700|GO:0006355
Vivi5g01413 331 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01413 Vivi-Chr5 40191517 40192652 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01413 15 175 Response Regulator Gene Family AT5G58080 35.673 1.15e-18 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi5g01413 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01413 - K14491 vvo:131604552 652.899