Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01411 ATGGCTGCGGTGATTAACGAAATGCCTAAAAGAAAGAAAGAGCAACATCATGATGATGTTGATGATGACAATGACTCATTGTCGACACCTAATAATAAGAAACGTCGTCGTGTAGTTTGGTCTCATGATCTCCATGCAAAGTTTGTTGATGCTGTTAAACTTATTGACATTTCAAATTCAAAGGTTGTTCCGAGTAAAATAGTTTCTTTAATGAATGTTGATGGAATTACTACCGCTCATGTCGCTAGCCATCTCCAGAGATACAGACTTCGTAACAAAGAGGCTACACATGAAGCTGATAGAGATAGGGTTCCTTCAACAAAGATTCTTCAGCCTACTGATCAATCTCAAAACATCACCAACAGCTCCTTTAACAAAAAGCATGTCCATCAATCTCACACACAAATGTACTCTCCATCTGGTTTCAACATGAGTGGAGATACTCCCTCAACACTAATTCAATCTCAATATATCAACAACCATCCACCGCCATCCACTTTTCCTACATATCATTACACCTCTAGTCTTCCAACTCCACTTGGATTTCCAACAACCTTCCACGACTTCCATGGATCATCTGCTTCTTCAACACTCATTCAACCTATTCAATCTCAACCTATCAACAACACCTCGCCAATCATCCATCCACCACCATCCACATTTCCTATATATCATCACACCTCTACTTTTCCAACTCTTGTTAACCAATCTACAACATCCCACTTCCATGACATTAGGGCTACTAACTCCCCTTTTGTTGGACCTTCTTCAAAAACCACAAGCATTTCAGATTATGAAGATCTGAGAAGGGAACCTCAGCTACTTCCGTTTCCCCACAATTCTTTGCCAGTGTTGGAGTCTCACAAAACAAGTCAAAATAGTCAAATGAATTCACAGCATGCACATAATGTAGAGCCAATTATTGTTGGATCATCTGCTTCTTTGGAAGACACAAACAATAATCTGTGGAATGATGATACTTTTATTGACTTTTCGGTTGAAGAAACTGATCCTCAGACTTTAGAGGACATTAGAAAGATGGGGGAAGGCATAGAAGATGATGATCTCCTTAACTCTTGGAAGCGCTTTCTAGAAATGGAATAA 1104 0.394 MAAVINEMPKRKKEQHHDDVDDDNDSLSTPNNKKRRRVVWSHDLHAKFVDAVKLIDISNSKVVPSKIVSLMNVDGITTAHVASHLQRYRLRNKEATHEADRDRVPSTKILQPTDQSQNITNSSFNKKHVHQSHTQMYSPSGFNMSGDTPSTLIQSQYINNHPPPSTFPTYHYTSSLPTPLGFPTTFHDFHGSSASSTLIQPIQSQPINNTSPIIHPPPSTFPIYHHTSTFPTLVNQSTTSHFHDIRATNSPFVGPSSKTTSISDYEDLRREPQLLPFPHNSLPVLESHKTSQNSQMNSQHAHNVEPIIVGSSASLEDTNNNLWNDDTFIDFSVEETDPQTLEDIRKMGEGIEDDDLLNSWKRFLEME 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01411 367 MobiDBLite consensus disorder prediction 7 32 - -
Vivi5g01411 367 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 11 321 IPR044841 GO:0003700|GO:0006355
Vivi5g01411 367 Gene3D - 31 94 - -
Vivi5g01411 367 MobiDBLite consensus disorder prediction 1 34 - -
Vivi5g01411 367 NCBIfam myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
Vivi5g01411 367 SUPERFAMILY Homeodomain-like 33 94 IPR009057 -
Vivi5g01411 367 FunFam Two-component response regulator 31 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01411 Vivi-Chr5 40062940 40064297 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01411 10 90 Response Regulator Gene Family AT3G16857 48.148 7.65e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi5g01411 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01411 - K14491 vvo:131604558 448.743