Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01396 ATGGCTTCAAAACGTCTTTTGGATGATTCTGATCAAGACAAACACAAACGTATCAGAACTACAACAACACCTTCTTTAGCTTCTGTAATGGGAGAAATTGTTATGGTGAGAAATATGCAAAACCTTTTCTCTGGCTTGGAACCATTACTTAGAAGAGTGGTGAACGAAGAAGTGGAACGAGCAATGAGACAATGTTATCCATCGCGATCGATGATAACAAAGTCACCTTCATTGAGACTTCAAGCAATGGAACATCCATCAAGTTTTCAATTCATTTTCAAAAAGAAGCTTCCTCTTTCAATATTCACAGGTAGTAGATTACTAGACATGGATGAAAACTCAATCAATGTCATTCTTGTTGACAAAAGCAATGGCCAAAATGTTGCTACAAGTCTACCTCACCCAATCAAGATAGAAATTGTAGTTCTTGATGGAGACTTTCCATCTAGTGAAAAGGAATCATCATGGACTAGTGAAGAATTCAATAGTAATATTGTGAAAGAAAGAACCGGGAAGAGACCATTGCTTACGGGAGAACTGAATCTTACTATGAGAGACGGAATTGCACCGATTGGAGATATTGAGTTCACCGATAATTCGAGCTGGATTCGTAGCAGAAAGTTTAGAATTGGTGTTAGAATTACTCAAGGGACTAATCAAAATGTTCGAATTCGTGAAGGCATGACCGAACCTTTTGTTGTTAAGGATCATCGCGGTGAATTGTACAAGAAACACCATCCACCAAGTCTAAATGATAAAGTGTGGCGTTTAGAGAAGATTGGAAAAGACGGAGCTTTTCACAAAAAATTGACTTCAGCAAAGATCACAACAGTTCAAGAGTTTCTCAAATTATCTGTAGTTGATCCTCATAGACTAAGAAAGATATTAGGCATTGGAATGTCAGAGAAAATGTGGGATGCAACAATGAAACATGCAAAGACTTGTGTAATGGGAAACAAACTTTATGTCTACCGTGGTCCTCAACTTACCATTTATCTGAATGCCATATGTCAAATGGTTAGAGCTTATAACATCAATGGCCAAACCATTCCCAACAGAGACATTAGCAACATCAACAAGAACTACATGCAAAATTATGTGAGAGAAGCATATGATAGATGGAATGAGTTGGAAGAAATTGAAGAAGCTTTGAATGATAATGTTGCTTTGTTAACTCAAGGTGAAAGTGTGGAACGATTTCAAAACAATAATCATCAAGCATCATATGAGGAGAATGACTTTTTTGTTGATAAATCTGGTTGCATAGAATGGTCACCATTTGCCACGTCATCGTTGTTGAATGGAATAGCTTATAGCTTCTCGGGAGCAATCATTGATGATGGAACCTTAAGGTGGCATTAG 1362 0.3737 MASKRLLDDSDQDKHKRIRTTTTPSLASVMGEIVMVRNMQNLFSGLEPLLRRVVNEEVERAMRQCYPSRSMITKSPSLRLQAMEHPSSFQFIFKKKLPLSIFTGSRLLDMDENSINVILVDKSNGQNVATSLPHPIKIEIVVLDGDFPSSEKESSWTSEEFNSNIVKERTGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRIGVRITQGTNQNVRIREGMTEPFVVKDHRGELYKKHHPPSLNDKVWRLEKIGKDGAFHKKLTSAKITTVQEFLKLSVVDPHRLRKILGIGMSEKMWDATMKHAKTCVMGNKLYVYRGPQLTIYLNAICQMVRAYNINGQTIPNRDISNINKNYMQNYVREAYDRWNELEEIEEALNDNVALLTQGESVERFQNNNHQASYEENDFFVDKSGCIEWSPFATSSLLNGIAYSFSGAIIDDGTLRWH 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01396 453 Pfam Calmodulin binding protein central domain 249 315 IPR046830 -
Vivi5g01396 453 PANTHER OS02G0177800 PROTEIN 1 407 IPR012416 GO:0005516
Vivi5g01396 453 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g01396 453 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g01396 453 Pfam Calmodulin binding protein C-terminal domain 320 380 IPR046829 -
Vivi5g01396 453 Pfam Calmodulin binding protein-like N-terminal domain 90 237 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01396 Vivi-Chr5 39163314 39165472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01396 4 381 Calmodulin-binding Proteins AT4G25800 47.781 8.21e-115 348