Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01380 ATGGAAACTAGTACCAACAAATCTCAAGGCCCTTCTTCTTCTACTGATTCAGACATTGATAATAGTGATTCAGGTTGTTGTTCCAGCAGTAGTAGTAGCAGATCTGATGCTGCAGCAGCAGCTGAGTTGAAATTGTATAGGGCTTTCATATTCTCTGTGCCTATTTTCTTCACTTTGATTCTTGTTTTTCTTTTCTATGTTTTCTATTTGAAACCTCGGAGGGTTGATTGGTCTTCTATAAGGATGAGGTCTGTTTCTGTTTTACAACATCATAATCACAACAATGATATCTCCACTTCTGATTTGGGGTTGAAGAAAGAATTGAGAGAGATGTTGCCTATTATTGTGTACAATGAAAGCTTCTCTGTCAAAGATACACTATGCTCAGTGTGTCTTTTGGATTACCAACCAGACGACAGACTACAACAGATTCCGATATGCGGCCATACGTTTCATATGAATTGCATTGATCTTTGGCTCGCCAGCCACAGCACCTGCCCTCTCTGCCGTCTGTCACTACTACCTACCGCTAAATCATCAACCGAAACATCTAATATGCAGGCCACGAGCAGTGAAGAAATGGAGATGCAACGGAGAAATGACGAAACGCCCGCCATGGAATTCTCTGACTCGGTATCTACTAGTCATCAAGAAACCACTGTCATTGAAAATGTCTCGGGAGAAGTTGGGATCAACCCTCACCCGCGCATCGATGTTCAAGAGCAAAACGTACGAAACAACCAATAG 747 0.4217 METSTNKSQGPSSSTDSDIDNSDSGCCSSSSSSRSDAAAAAELKLYRAFIFSVPIFFTLILVFLFYVFYLKPRRVDWSSIRMRSVSVLQHHNHNNDISTSDLGLKKELREMLPIIVYNESFSVKDTLCSVCLLDYQPDDRLQQIPICGHTFHMNCIDLWLASHSTCPLCRLSLLPTAKSSTETSNMQATSSEEMEMQRRNDETPAMEFSDSVSTSHQETTVIENVSGEVGINPHPRIDVQEQNVRNNQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01380 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 177 IPR013083 -
Vivi5g01380 248 CDD RING-H2_EL5-like 128 170 - -
Vivi5g01380 248 SMART ring_2 128 169 IPR001841 -
Vivi5g01380 248 MobiDBLite consensus disorder prediction 1 32 - -
Vivi5g01380 248 SUPERFAMILY RING/U-box 112 175 - -
Vivi5g01380 248 PANTHER RING-H2 FINGER PROTEIN ATL16 45 227 IPR044600 GO:0016567|GO:0016740
Vivi5g01380 248 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vivi5g01380 248 MobiDBLite consensus disorder prediction 224 248 - -
Vivi5g01380 248 FunFam RING-H2 finger protein ATL7 94 175 - -
Vivi5g01380 248 Pfam Ring finger domain 128 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01380 Vivi-Chr5 38682002 38684376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01380 35 175 C3H Transcription Factor Family AT4G10150 59.028 2.82e-61 191