Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01379 ATGGAAACTAGTACCAACAAATCTCAAGGCCCTTCTTCTTCTACTGATTCAGACATTGATAATAGTGATTCAGGTTGTTGTTCCAGCAGTAGTAGTAGCAGATCTGATGCTGCAGCAGCAGCTGAGTTGAAATTGTATAGGGCTTTCATATTCTCTGTGCCTATTTTCTTCACTTTGATTCTTGTTTTTCTTTTCTATGTTTTCTATTTGAAACCTCGGAGGGTTGATTGGTCTTCTATAAGGATGAGGTCTGTTTCTGTTTTACAACATCATAATCACAACAATGATATCTCCACTTCTGATTTGGGGTTGAAGAAAGAATTGAGAGAGATGTTGCCTATTATTGTGTACAATGAAAGCTTCTCTGTCAAAGATACACTATGCTCAGTGTGTCTTTTGGATTACCAACCAGACGACAGACTACAACAGATTCCGATATGCGGCCATACGTTTCATATGAATTGCATTGATCTTTGGCTCGCCAGCCACAGCACCTGCCCTCTCTGCCGTCTGTCACTACTACCTACCGCTAAATCATCAACCGAAACATCTAATATGCAGTGTTTAGATTATTTATCGTTCATGGCAGATATACTGACAATGAAACTCTCTGATGGAGGCCACGAGCAGTGA 633 0.4028 METSTNKSQGPSSSTDSDIDNSDSGCCSSSSSSRSDAAAAAELKLYRAFIFSVPIFFTLILVFLFYVFYLKPRRVDWSSIRMRSVSVLQHHNHNNDISTSDLGLKKELREMLPIIVYNESFSVKDTLCSVCLLDYQPDDRLQQIPICGHTFHMNCIDLWLASHSTCPLCRLSLLPTAKSSTETSNMQCLDYLSFMADILTMKLSDGGHEQ 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01379 210 FunFam RING-H2 finger protein ATL7 94 175 - -
Vivi5g01379 210 CDD RING-H2_EL5-like 128 170 - -
Vivi5g01379 210 SMART ring_2 128 169 IPR001841 -
Vivi5g01379 210 MobiDBLite consensus disorder prediction 1 32 - -
Vivi5g01379 210 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vivi5g01379 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 175 IPR013083 -
Vivi5g01379 210 Pfam Ring finger domain 128 170 IPR001841 -
Vivi5g01379 210 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 45 182 IPR045899 -
Vivi5g01379 210 SUPERFAMILY RING/U-box 112 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01379 Vivi-Chr5 38682000 38684092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01379 35 175 C3H Transcription Factor Family AT4G10150 59.028 4.62e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01379 K19039 - qsa:O6P43_001690 207.608