Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01364 ATGGAAAGAGAATTTGAAAGAGGTTACATAAAAAAAGGACCATGGAGTAGTGAAGAAGATGAAGTGTTACTGAAACATGTTAACAAGTATGGTCCAAGGGATTGGAGCTCCATTCGATCCAAAGGCTTTTTGCCGAGAACTGGAAAATCTTGTCGGTTGAGATGGGTTAACAAGCTTAGACCAAACTTGAAAACAGGGTGCAAATTTTCAGCAGAGGAGGAAAGGGTGGTGATTGAATTACAGGAGCAATTTGGAAACAAATGGGCAAAAATTGCTACGTATTTGGAAGGGAGAACAGACAATGATGTGAAGAATTTTTGGAGTAGCAGGAGAAAAAGGATGGAGAGTTCGTCTCCGAGGACACCATCACCATCACCAAAGCAGCAGAAAAACAAAGGAAAAGATGTTGTTAATAATAATCAAGTGAAAGTTGAAAAGGTTCCTGCATGTGGTTCTAATCAGCTAGAGGAAAACTTTACTTACCCTACTTCTTGTATGGGAAACAAAGAGGAGTTCAAGATGGTGAACCTGCCAGATTTAACAAAGCCAAACTACCAAAATATGGAAAGTGACATTAATGGAATTGAGTTTGAGGCTACTCCACTTCACACGGTACCGTCATTTGAGTCTTCGTCGGCGGCATACAACTTTCCTCTACACCCAGAACCACATATGGACTTTCCACTACTCCCAGAGTGTCAGGACCTTGTTCAAGAGCCCTTTGATCCCAATTTTATGGACATGTTTGAGCAGAAAAAGGATTCAGATTGTGTGTGGAGCCAGAAGCTTGGGACCAGGTTGCCAACTCTTGGAACTGAAGGAAATTCTCAGAGTAGTTCAAATTGCTTGTTTCAAGACTTCTCAACCGAGTTTTTTGAATACTTTGCTTAG 891 0.4108 MEREFERGYIKKGPWSSEEDEVLLKHVNKYGPRDWSSIRSKGFLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEERVVIELQEQFGNKWAKIATYLEGRTDNDVKNFWSSRRKRMESSSPRTPSPSPKQQKNKGKDVVNNNQVKVEKVPACGSNQLEENFTYPTSCMGNKEEFKMVNLPDLTKPNYQNMESDINGIEFEATPLHTVPSFESSSAAYNFPLHPEPHMDFPLLPECQDLVQEPFDPNFMDMFEQKKDSDCVWSQKLGTRLPTLGTEGNSQSSSNCLFQDFSTEFFEYFA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01364 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Vivi5g01364 296 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Vivi5g01364 296 MobiDBLite consensus disorder prediction 110 139 - -
Vivi5g01364 296 FunFam MYB transcription factor 12 64 - -
Vivi5g01364 296 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Vivi5g01364 296 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Vivi5g01364 296 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vivi5g01364 296 Gene3D - 11 64 - -
Vivi5g01364 296 PANTHER TRANSCRIPTION FACTOR DUO1 5 295 - -
Vivi5g01364 296 Gene3D - 67 142 - -
Vivi5g01364 296 SMART sant 65 113 IPR001005 -
Vivi5g01364 296 SMART sant 11 61 IPR001005 -
Vivi5g01364 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Vivi5g01364 296 MobiDBLite consensus disorder prediction 118 138 - -
Vivi5g01364 296 CDD SANT 14 59 IPR001005 -
Vivi5g01364 296 CDD SANT 68 107 IPR001005 -
Vivi5g01364 296 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Vivi5g01364 296 FunFam Transcription factor GAMYB 67 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01364 Vivi-Chr5 38232728 38234371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01364 4 114 MYB Transcription Factor Family AT3G60460 80.180 2.38e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g01364 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01364 K09422 - gmx:121173231 398.282