Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01352 ATGGAGCTTGATTTGAATCAGGAGCCTTTGGATCAAACTAGTAGTTCAGTAGTTGAATTTGATTCCGTATTGGAAGAACTCGAAGCTGCCGAGGGAAATATTCGGGACCGAATAAGACACCTCGAAGAGATTACTTCGAGAGCGAGGCAGAGTCGGGGGTTGCCGCGGAGGATGAATTCGCCGATTCGGATAACTAATTTTACGGGAGAAGCGGCGAGTGGTGAGGATGTTGGAGATGAAGAGGAAAGGGAGGAGCAGAATGATGTTGAGAAAGGTGGGAAAAGGAAAAGTGCGCATTTAGTAGCGAAAGCGTTGGGGGTGGAGGAGGTTGAGGATGGTAAAGTGGAGGAGAGTAGTGGGGGGTTTTATGATTGTAATATATGTTTGGAGGTTGCGAGGGATCCTGTTTTGACGTGTTGTGGGCATTTGTTTTGTTGGCCGTGTTTTTATCAGTTGTCGTATGTTTATTCGAGAGCGAAGGAGTGTCCTGTTTGTAAGGGGGAGGTTACTGAAGCGGGTGTTATTCCGATTTACGGGAATGGTAATGCGGGAGCTGATTGCCAGATGGAAATGAAAGAAGCCGGTTTGAGAGTTCCTCCTCGGCCTAAAGCTCCTAGAATTGAGAGTATCAGACAGAAGTTGATAACTCAAGGTGCATCTTCTTCGTCTATTGTCCAAAGCATTCGGCGGTTTCATAACCGGATTGGTGGATTTGGCGAACAAGCTCAGGTAGAAAGCCCTAATACCAGAGGTGATAGAAGTAATGGCACACTCGTTCGTTCTCGCACGCAGACTGATATTAATCAACATGCTGGCACTCATCAAGTTTCGAGGCTGCTAGAACAAGGAGCTTCTTCATTTTCATCGCTTTCATCAGCGCTAAATTCTGCAATGGATTCTGCAGAAAGATTAGTTCAGGACCTTGAATCTTATATCCACGGCCACAATATAGGAGGAAGCAGAGAGCTAAACACTCATGCTGATAATAGAAGTCCATCGCTTAGTATTGCTGCGACAAATCGCACAGAGAGCCGTGCTCAAGATGTTGTTGACGTGGCCAATTCTGCTGCTGCTGCAGCTAGGAATGTTGACGATATTGCTGTTATTGGTTCAGAAATTCTGACAATTGATAGAGACATACAGATTAGTCCGTTAGACCCTTCTTCGTCAAATAGTAGAAGAAGAAACGGTGTTTCAAGACAAGTTTCAAATGAACCTAGAAGAAGAAGAAGATTGAGATGA 1242 0.4509 MELDLNQEPLDQTSSSVVEFDSVLEELEAAEGNIRDRIRHLEEITSRARQSRGLPRRMNSPIRITNFTGEAASGEDVGDEEEREEQNDVEKGGKRKSAHLVAKALGVEEVEDGKVEESSGGFYDCNICLEVARDPVLTCCGHLFCWPCFYQLSYVYSRAKECPVCKGEVTEAGVIPIYGNGNAGADCQMEMKEAGLRVPPRPKAPRIESIRQKLITQGASSSSIVQSIRRFHNRIGGFGEQAQVESPNTRGDRSNGTLVRSRTQTDINQHAGTHQVSRLLEQGASSFSSLSSALNSAMDSAERLVQDLESYIHGHNIGGSRELNTHADNRSPSLSIAATNRTESRAQDVVDVANSAAAAARNVDDIAVIGSEILTIDRDIQISPLDPSSSNSRRRNGVSRQVSNEPRRRRRLR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01352 413 MobiDBLite consensus disorder prediction 382 399 - -
Vivi5g01352 413 MobiDBLite consensus disorder prediction 242 258 - -
Vivi5g01352 413 SMART ring_2 125 165 IPR001841 -
Vivi5g01352 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 204 IPR013083 -
Vivi5g01352 413 Pfam zinc-RING finger domain 125 166 IPR001841 -
Vivi5g01352 413 SUPERFAMILY RING/U-box 122 174 - -
Vivi5g01352 413 MobiDBLite consensus disorder prediction 238 258 - -
Vivi5g01352 413 ProSiteProfiles Zinc finger RING-type profile. 125 166 IPR001841 -
Vivi5g01352 413 MobiDBLite consensus disorder prediction 64 95 - -
Vivi5g01352 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 95 289 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi5g01352 413 Coils Coil 24 44 - -
Vivi5g01352 413 MobiDBLite consensus disorder prediction 382 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01352 Vivi-Chr5 37968657 37970609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01352 118 360 C3H Transcription Factor Family AT3G58030 35.439 1.05e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01352 - - cam:101488454 494.967