Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01351 ATGGAGCCTTTGGATCAAACTAGTAGTTCAGTAGTTGAATTTGATTCCGTATTGGAAGAACTCGAAGCTGCCGAGGGAAATATTCGGGACCGAATAAGACACCTCGAAGAGATTACTTCGAGAGCGAGGCAGAGTCGGGGGTTGCCGCGGAGGATGAATTCGCCGATTCGGATAACTAATTTTACGGGAGAAGCGGCGAGTGGTGAGGATGTTGGAGATGAAGAGGAAAGGGAGGAGCAGAATGATGTTGAGAAAGGTGGGAAAAGGAAAAGTGCGCATTTAGTAGCGAAAGCGTTGGGGGTGGAGGAGGTTGAGGATGGTAAAGTGGAGGAGAGTAGTGGGGGGTTTTATGATTGTAATATATGTTTGGAGGTTGCGAGGGATCCTGTTTTGACGTGTTGTGGGCATTTGTTTTGTTGGCCGTGTTTTTATCAGTTGTCGTATGTTTATTCGAGAGCGAAGGAGTGTCCTGTTTGTAAGGGGGAGGTTACTGAAGCGGGTGTTATTCCGATTTACGGGAATGGTAATGCGGGAGCTGATTGCCAGATGGAAATGAAAGAAGCCGGTTTGAGAGTTCCTCCTCGGCCTAAAGCTCCTAGAATTGAGAGTATCAGACAGAAGTTGATAACTCAAGGTGCATCTTCTTCGTCTATTGTCCAAAGCATTCGGCGGTTTCATAACCGGATTGGTGGATTTGGCGAACAAGCTCAGGTAGAAAGCCCTAATACCAGAGGTGATAGAAGTAATGGCACACTCGTTCGTTCTCGCACGCAGACTGATATTAATCAACATGCTGGCACTCATCAAGTTTCGAGGCTGCTAGAACAAGGAGCTTCTTCATTTTCATCGCTTTCATCAGCGCTAAATTCTGCAATGGATTCTGCAGAAAGATTAGTTCAGGACCTTGAATCTTATATCCACGGCCACAATATAGGAGGAAGCAGAGAGCTAAACACTCATGCTGATAATAGAAGTCCATCGCTTAGTATTGCTGCGACAAATCGCACAGAGAGCCGTGCTCAAGATGTTGTTGACGTGGCCAATTCTGCTGCTGCTGCAGCTAGGAATGTTGACGATATTGCTGTTATTGGTTCAGAAATTCTGACAATTGATAGAGACATACAGATTAGTCCGTTAGACCCTTCTTCGTCAAATAGTAGAAGAAGAAACGGTGTTTCAAGACAAGTTTCAAATGAACCTAGAAGAAGAAGAAGATTGAGATGA 1224 0.4518 MEPLDQTSSSVVEFDSVLEELEAAEGNIRDRIRHLEEITSRARQSRGLPRRMNSPIRITNFTGEAASGEDVGDEEEREEQNDVEKGGKRKSAHLVAKALGVEEVEDGKVEESSGGFYDCNICLEVARDPVLTCCGHLFCWPCFYQLSYVYSRAKECPVCKGEVTEAGVIPIYGNGNAGADCQMEMKEAGLRVPPRPKAPRIESIRQKLITQGASSSSIVQSIRRFHNRIGGFGEQAQVESPNTRGDRSNGTLVRSRTQTDINQHAGTHQVSRLLEQGASSFSSLSSALNSAMDSAERLVQDLESYIHGHNIGGSRELNTHADNRSPSLSIAATNRTESRAQDVVDVANSAAAAARNVDDIAVIGSEILTIDRDIQISPLDPSSSNSRRRNGVSRQVSNEPRRRRRLR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01351 407 SMART ring_2 119 159 IPR001841 -
Vivi5g01351 407 MobiDBLite consensus disorder prediction 63 89 - -
Vivi5g01351 407 SUPERFAMILY RING/U-box 116 168 - -
Vivi5g01351 407 MobiDBLite consensus disorder prediction 376 393 - -
Vivi5g01351 407 MobiDBLite consensus disorder prediction 236 252 - -
Vivi5g01351 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 198 IPR013083 -
Vivi5g01351 407 MobiDBLite consensus disorder prediction 232 252 - -
Vivi5g01351 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 87 283 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi5g01351 407 Pfam zinc-RING finger domain 119 160 IPR001841 -
Vivi5g01351 407 Coils Coil 18 38 - -
Vivi5g01351 407 ProSiteProfiles Zinc finger RING-type profile. 119 160 IPR001841 -
Vivi5g01351 407 MobiDBLite consensus disorder prediction 376 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01351 Vivi-Chr5 37968657 37970614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01351 112 354 C3H Transcription Factor Family AT3G58030 35.439 9.97e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01351 - - cam:101488454 483.411