Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01323 ATGAAAAGTCATCATAATCATAATCTTCTTCTTCATTCTTCTTTTACTTCTGATATCAACAACTCTATCATAGACTTAAATCCCAATCATCAATTCACAAAAAACATGCCGATATCACCTCAAACTTTCCCTACAACTAAACGACCACCTTCAGAGTCGTCGTTTATCTCTCCAAACCTCAATAACTTCAATCTTCTCCACTCTCTGTTACACCTCACCTACCAAATATCTTCATTAAACGCACCTCCTTGGTGTCGTTTTCTCTTGAACAAAACCTCATCTTCCACCATCCGTAAAACGCAGCTACTCGGTGTCGTTTTCGAAGACCTAATTCGCAGTGATTCAACTTCAACTTCAACTTCAATTTCAATTTCAACCACTATTTGTTCAAACTCTTTTGATCTTTGTCTTGAAGAAATGTACATAGTGTTACACAGGATCAAAACGTTGATTGAAGATTGTTCCAATGGAAGCAAATTCTCTATTCTAATGCAAATTGAAATCATCGCTGATAATTTCAACAAACTCACCGGAGAATTATCGACGCTTCTAGATGTTTTTCCGATCCATCAGTTTAATCTCAACGACGACGTTTTGGAGATTGTTCATCTCATCAGAAAACAGTGTTCAGAATCAAAGCTTCAATTAGGTGAAGAACAGATCAATCTCCGAAACGATGTCGTTTCTGTTCTGGAAGGGATTAAAAGGGAGATTGTTCCGAATAAGGAGAAACTAGCTTCGATTTTCGAGAAACTGGAGATTCGCGATTCATCAACATGCAGAACTGAGATTGAAAATCTTCAAGAAGAGATTCAGAATCAAAGTGAAGAACAATCGAAATCAAATATGTTTGCTTTGATCGGCCTTGTTCGTTACGCGAAGTGTGTTCTCTTCGGAGCATCAACGCCGTCGACGAGAATTGAAACACTCCGGCGGAATCAGTCGTTGGAGATTGTTGTTCCGGCGGATTACCGGTGTCCGATAAGCTTAGAACTGATTCGTGATCCTGTCGTCGTGGCAACAGGACAGACGTACGATCGTGCCTCCATCAAGTTATGGATTGAATCTGGACATAACACGTGTCCTAAAACAGGTCAGACCCTGGCCCACACGGATTTAATACCTAATCATGCTTTGAGAAACATGATAGCTTTGTGGTGCAGAGAACAGAAAATTCCGTTTGAAGATGACACGGTTACCGTTAAAATAAACGGCGGTGTTGCCAATAAAACAGCTTTGGAAGCTACGAGAATGACGGCGTCGTTTTTAGTCAACAAGTTGACATTGACTAACTCAATGGAAGATACAAACGGCGTCGTTTATGAGCTTCGGGTGTTAGCGAAAACTGATTCAGAAAGCCGAGCCTGTATAGCCGAAGCTGGAGCTATAGAGCTTTTGGTTCGGTTTTTAAACTATGAAGTTGGTTCGAACAACCCGAGCCTACAAGTTAACGCCGTGACAACGATTTTAAATCTTTCTATCCTTGAAGCGAATAAGATAAAGATAATGGAAAGTGAGGGTGCGTTAAATGGTATAACGGAGGTTTTACGAGCAGGTGCCACGTGGGAGGCGAAATCGAATGCTGCGGCGACGGTGTTTAGTTTAACGGGAGTTGTTGCTTTTAGAAAACGGTTAGGGAGGAAGACACGTGTCGTTAGTGGATTGGTTGAGTTAGCGAAGAGTGGGCCTGAGGGAGCGAAGAGAGATGCTCTTGCCGCGATTTTGAATCTGGCGTCGGATCGTGAGACGGTGGCGAGGTTAGTTGAGAGTGGCGCGGTTCAAATGACAGCGGAGATAATGCCGGGAATGCCGGAGGAGGCTGTGACGATACTTGAAGCGGTGGTTAAGCGGGGAGGATTGGTGGCGGTTGCGGCGGCTTTTATGGGGATAAAGAAATTGGGGAAGGTGTTGAGGGAGGGATCGGAGAGAGCAAGAGAGAGTGCAGCGGCGACGCTGGTGACGATGTGTAGGAAAGGTGGATCGGAGATTGTGACGGAGCTTGCGGGGATTCATGGTGTGGAGAGGGTGATTTGGGAGTTGATGGCGGTGGGGAGTGTGAGAGGGAGGAGGAAGGCGGCGACGTTGTTGAGGATTTTACGGCGGTGGGCGGCGGGTTTGGACGGTGGTGAAACGGAAGGGTTTTCTACAACTAATGCTTCTGTTAGTGCGTCAACTACCGTGGTTGTTCCAACTACTACTTCATCAGTACAATAG 2214 0.4467 MKSHHNHNLLLHSSFTSDINNSIIDLNPNHQFTKNMPISPQTFPTTKRPPSESSFISPNLNNFNLLHSLLHLTYQISSLNAPPWCRFLLNKTSSSTIRKTQLLGVVFEDLIRSDSTSTSTSISISTTICSNSFDLCLEEMYIVLHRIKTLIEDCSNGSKFSILMQIEIIADNFNKLTGELSTLLDVFPIHQFNLNDDVLEIVHLIRKQCSESKLQLGEEQINLRNDVVSVLEGIKREIVPNKEKLASIFEKLEIRDSSTCRTEIENLQEEIQNQSEEQSKSNMFALIGLVRYAKCVLFGASTPSTRIETLRRNQSLEIVVPADYRCPISLELIRDPVVVATGQTYDRASIKLWIESGHNTCPKTGQTLAHTDLIPNHALRNMIALWCREQKIPFEDDTVTVKINGGVANKTALEATRMTASFLVNKLTLTNSMEDTNGVVYELRVLAKTDSESRACIAEAGAIELLVRFLNYEVGSNNPSLQVNAVTTILNLSILEANKIKIMESEGALNGITEVLRAGATWEAKSNAAATVFSLTGVVAFRKRLGRKTRVVSGLVELAKSGPEGAKRDALAAILNLASDRETVARLVESGAVQMTAEIMPGMPEEAVTILEAVVKRGGLVAVAAAFMGIKKLGKVLREGSERARESAAATLVTMCRKGGSEIVTELAGIHGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGETEGFSTTNASVSASTTVVVPTTTSSVQ 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01323 737 Pfam Armadillo/beta-catenin-like repeat 450 493 IPR000225 GO:0005515
Vivi5g01323 737 Pfam U-box domain 320 391 IPR003613 GO:0004842|GO:0016567
Vivi5g01323 737 SMART arm_5 450 494 IPR000225 GO:0005515
Vivi5g01323 737 Gene3D - 405 623 IPR011989 -
Vivi5g01323 737 ProSiteProfiles U-box domain profile. 319 393 IPR003613 GO:0004842|GO:0016567
Vivi5g01323 737 SMART Ubox_2 323 386 IPR003613 GO:0004842|GO:0016567
Vivi5g01323 737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 398 IPR013083 -
Vivi5g01323 737 SUPERFAMILY RING/U-box 316 394 - -
Vivi5g01323 737 SUPERFAMILY ARM repeat 432 699 IPR016024 -
Vivi5g01323 737 Coils Coil 257 277 - -
Vivi5g01323 737 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 461 507 IPR000225 GO:0005515
Vivi5g01323 737 CDD RING-Ubox_PUB 321 373 IPR045210 -
Vivi5g01323 737 PANTHER U BOX DOMAIN-CONTAINING 121 700 - -
Vivi5g01323 737 FunFam RING-type E3 ubiquitin transferase 316 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01323 Vivi-Chr5 36626357 36628938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01323 47 733 U-box Gene Family AT5G01830 53.902 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01323 - - tpra:123922727 1103.2