Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01294 ATGGAGTCAAAGTGCTGCATGAACGGTTTGTGTGGTGCCTCCACGTCGATACGGTGGCGGAAAGGTTGGATACTTCGATCCGGTGAATTCGCCGATCTATGCGATAAGTGCGGTTCTGCTTATGAGAAATCAGAGTTTTGTGATGTGTTCCATGCGAAAGATTCTGGTTGGAGAGAGTGCACTTCATGTGGCAAGCGTCTTCACTGTGGATGTGTTGCTTCAAGGTCTCAGCTTGAAATACTTGATACTAGTGGTGTAAGCTGTATAACCTGTGCAAGTAATTTAGGACTTCAACCTATTGTTAGTAATGAAAAGCCCAATGAATCTGAAACAGCAAAGGGAAAACATGTCAGTGCGCAACAGTGCATATCTTTGGTTGACCAATTAAATGTGAAGGATATGCAAGTTGGGAATTATGTAGAAAATGACGGTCTGAGGTGCTGGCTCAAACCTCACAATGTTGATATGGATGGACCTTCTACAGAAATCAAACCAGAAGTTTTACAGTCTGTTGGAGAATTTGGTAACACTTTGATATCTCAATTTCATCTTGAGTCAAATGGATCATCTAGGACTGCCAATGTAGAGAACTGTAAGGCAGACAGCATGCAAGGTATATATGAATCAGTGGCACAGACAAATTTGAGTATGACCCTTGCTGCCCCTTTGGTAAATTTGAATCCCTTTCATAATGCCCTTGTTGATGAAAGAGAACAAAGAAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGCCATCTTTTACCTAGACCCCCTAGGCCAACTCTCTCTCCAGGCTTAGAAGGTAATGCAGGCACGGTGTCCCAGATTCGTATAGCAAGGCCTCCTGCTGAAGGACGAGGAAGGAATCAGTTGCTTCCACGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCTGGAGATCCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGGTTGGTTCTACCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATATCTCAACCTGAGGGCCTTCCTCTGCGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAACAACAGTAGGATGTATGTTTTAGAAGGAGTAACCCCCTGCATTCAGTCTATGCAACTGCAAGCTGGTGATACTGTTACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAAGCAACGAATTCTACTTCATTACAGTCTCAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAGTGGAACTCAGTTGGCGGTGACATGGATTGGCATAATGTAGAAGCACCCGAAAGCAGGAAAAGAGACGCATTGTCTTTGCCACCTGTGCTGGTTCCCGAGAAGAAAAGAACCAGGAATATTGGGTCAAAGAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTCACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCGCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGACCACATATTTGAAGAATATGAAGAGCCTCCTGTCTTTGGAAAGAAGAGTATATTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGGCACAATGTGATAGTTGCTTAAAATGGCGGAAGTTACCGGTTGATGTACTTATTCCCTCTAAGTGGACATGTATGGAGAATTTTTGGGATCAAAGCAGGTGTTCGTGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATTATCTTTTGAGAATGAACAAGGAATTCAAGAAACAAAGACTAGCAGCAGCAAGCCAGAGGCCAGCTTTGGAACGTGAATCTTCTGGTCTTGATGCTTTGGCCAGTGCTGCAGTACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTCGTGACCACTACAAAACACCCTCGTCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGAAAACACAAACCTTCCTGCACCTGTAACGTGTGCTTGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAGCGAGAAGCTGAGATTGCTCAGAAAAATCAGCTATCATGGAGGACCAATGATGAATCAGAAGTAGACAGCACTACTCGACATTTAACTCCAGTTGATGGTTCGGAGAATGAAGCAAGGGTGCCAAATGAGTTAAGCTCAAGGAGTCAAGACCAAGTGGTTGAAGTTGCCAAGGGACAATTAGACTTGAACTCCCAACCGGACCGGGAAGACATGCAAGCTGGACCAAACACTTTGAGCATGATGTCTCTTCTTGAAGAAGCAAATCTCCCATTGGAGACATACCTGAAGCAAAATGGTCTCTCTAGCCTGATATCAGAGCAGCAAACAAACTCAACATCAAATGTGCAGCCACAGACAACCACTGAGAGTGAGGGAAGACAAAATGAAGATTGCTGTACTGCTTCTGCAGGTCATGAACAGGTAGGCAGTCCTGAAGAAAACAGTGAGCAAGACAGAGACCAAAACAATTCAGTTTCATGA 2616 0.4423 MESKCCMNGLCGASTSIRWRKGWILRSGEFADLCDKCGSAYEKSEFCDVFHAKDSGWRECTSCGKRLHCGCVASRSQLEILDTSGVSCITCASNLGLQPIVSNEKPNESETAKGKHVSAQQCISLVDQLNVKDMQVGNYVENDGLRCWLKPHNVDMDGPSTEIKPEVLQSVGEFGNTLISQFHLESNGSSRTANVENCKADSMQGIYESVAQTNLSMTLAAPLVNLNPFHNALVDEREQRKMSPPLLLASRSRHLLPRPPRPTLSPGLEGNAGTVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDPNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTSLQSQKGCSETHLNVLSKKWNSVGGDMDWHNVEAPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHIFEEYEEPPVFGKKSIFVVRSNGINEQWAQCDSCLKWRKLPVDVLIPSKWTCMENFWDQSRCSCAAPNELNPRELDYLLRMNKEFKKQRLAAASQRPALERESSGLDALASAAVLGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPSCTCNVCLTVKRRFKTLMMRKKKRQSEREAEIAQKNQLSWRTNDESEVDSTTRHLTPVDGSENEARVPNELSSRSQDQVVEVAKGQLDLNSQPDREDMQAGPNTLSMMSLLEEANLPLETYLKQNGLSSLISEQQTNSTSNVQPQTTTESEGRQNEDCCTASAGHEQVGSPEENSEQDRDQNNSVS 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01294 871 SMART B3_2 321 421 IPR003340 GO:0003677
Vivi5g01294 871 Gene3D - 553 608 - -
Vivi5g01294 871 Pfam CW-type Zinc Finger 555 597 IPR011124 GO:0008270
Vivi5g01294 871 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Vivi5g01294 871 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Vivi5g01294 871 CDD B3_DNA 319 420 IPR003340 GO:0003677
Vivi5g01294 871 MobiDBLite consensus disorder prediction 704 763 - -
Vivi5g01294 871 ProSiteProfiles Zinc finger CW-type profile. 550 600 IPR011124 GO:0008270
Vivi5g01294 871 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Vivi5g01294 871 Gene3D - 299 426 IPR015300 -
Vivi5g01294 871 MobiDBLite consensus disorder prediction 817 846 - -
Vivi5g01294 871 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 823 - -
Vivi5g01294 871 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Vivi5g01294 871 MobiDBLite consensus disorder prediction 817 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01294 Vivi-Chr5 35059620 35068684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01294 1 853 B3 DNA Binding Superfamily AT4G32010 50.992 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi5g01294 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01294 K09287 - gmx:100778833 1442.94