Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01293 ATGGAGTCAAAGTGCTGCATGAACGGTTTGTGTGGTGCCTCCACGTCGATACGGTGGCGGAAAGGTTGGATACTTCGATCCGGTGAATTCGCCGATCTATGCGATAAGTGCGGTTCTGCTTATGAGAAATCAGAGTTTTGTGATGTGTTCCATGCGAAAGATTCTGGTTGGAGAGAGTGCACTTCATGTGGCAAGCGTCTTCACTGTGGATGTGTTGCTTCAAGGTCTCAGCTTGAAATACTTGATACTAGTGGTGTAAGCTGTATAACCTGTGCAAGTAATTTAGGACTTCAACCTATTGTTAGTAATGAAAAGCCCAATGAATCTGAAACAGCAAAGGGAAAACATGTCAGTGCGCAACAGTGCATATCTTTGGTTGACCAATTAAATGTGAAGGATATGCAAGTTGGGAATTATGTAGAAAATGACGGTCTGAGGTGCTGGCTCAAACCTCACAATGTTGATATGGATGGACCTTCTACAGAAATCAAACCAGAAGTTTTACAGTCTGTTGGAGAATTTGGTAACACTTTGATATCTCAATTTCATCTTGAGTCAAATGGATCATCTAGGACTGCCAATGTAGAGAACTGTAAGGCAGACAGCATGCAAGGTATATATGAATCAGTGGCACAGACAAATTTGAGTATGACCCTTGCTGCCCCTTTGGTAAATTTGAATCCCTTTCATAATGCCCTTGTTGATGAAAGAGAACAAAGAAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGCCATCTTTTACCTAGACCCCCTAGGCCAACTCTCTCTCCAGGCTTAGAAGGTAATGCAGGCACGGTGTCCCAGATTCGTATAGCAAGGCCTCCTGCTGAAGGACGAGGAAGGAATCAGTTGCTTCCACGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCTGGAGATCCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGGTTGGTTCTACCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATATCTCAACCTGAGGGCCTTCCTCTGCGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAACAACAGTAGGATGTATGTTTTAGAAGGAGTAACCCCCTGCATTCAGTCTATGCAACTGCAAGCTGGTGATACTGTTACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAAGCAACGAATTCTACTTCATTACAGGAAACTTTTCCGTCTAGTATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATATACCTATATTAAGTGGTTACTGTGGCCTTCTTCAGTCTCAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAGTGGAACTCAGTTGGCGGTGACATGGATTGGCATAATGTAGAAGCACCCGAAAGCAGGAAAAGAGACGCATTGTCTTTGCCACCTGTGCTGGTTCCCGAGAAGAAAAGAACCAGGAATATTGGGTCAAAGAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTCACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCGCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGACCACATATTTGAAGAATATGAAGAGCCTCCTGTCTTTGGAAAGAAGAGTATATTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGGCACAATGTGATAGTTGCTTAAAATGGCGGAAGTTACCGGTTGATGTACTTATTCCCTCTAAGTGGACATGTATGGAGAATTTTTGGGATCAAAGCAGGTGTTCGTGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATTATCTTTTGAGAATGAACAAGGAATTCAAGAAACAAAGACTAGCAGCAGCAAGCCAGAGGCCAGCTTTGGAACGTGAATCTTCTGGTCTTGATGCTTTGGCCAGTGCTGCAGTACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTCGTGACCACTACAAAACACCCTCGTCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGAAAACACAAACCTTCCTGCACCTGTAACGTGTGCTTGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAGCGAGAAGCTGAGATTGCTCAGAAAAATCAGCTATCATGGAGGACCAATGATGAATCAGAAGTAGACAGCACTACTCGACATTTAACTCCAGTTGATGGTTCGGAGAATGAAGCAAGGGTGCCAAATGAGTTAAGCTCAAGGAGTCAAGACCAAGTGGTTGAAGTTGCCAAGGGACAATTAGACTTGAACTCCCAACCGGACCGGGAAGACATGCAAGCTGGACCAAACACTTTGAGCATGATGTCTCTTCTTGAAGAAGCAAATCTCCCATTGGAGACATACCTGAAGCAAAATGGTCTCTCTAGCCTGATATCAGAGCAGCAAACAAACTCAACATCAAATGTGCAGCCACAGACAACCACTGAGAGTGAGGGAAGACAAAATGAAGATTGCTGTACTGCTTCTGCAGGTCATGAACAGGTAGGCAGTCCTGAAGAAAACAGTGAGCAAGACAGAGACCAAAACAATTCAGTTTCATGA 2724 0.4398 MESKCCMNGLCGASTSIRWRKGWILRSGEFADLCDKCGSAYEKSEFCDVFHAKDSGWRECTSCGKRLHCGCVASRSQLEILDTSGVSCITCASNLGLQPIVSNEKPNESETAKGKHVSAQQCISLVDQLNVKDMQVGNYVENDGLRCWLKPHNVDMDGPSTEIKPEVLQSVGEFGNTLISQFHLESNGSSRTANVENCKADSMQGIYESVAQTNLSMTLAAPLVNLNPFHNALVDEREQRKMSPPLLLASRSRHLLPRPPRPTLSPGLEGNAGTVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDPNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTSLQETFPSSMPNGSHSSETSYSGVYENIPILSGYCGLLQSQKGCSETHLNVLSKKWNSVGGDMDWHNVEAPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHIFEEYEEPPVFGKKSIFVVRSNGINEQWAQCDSCLKWRKLPVDVLIPSKWTCMENFWDQSRCSCAAPNELNPRELDYLLRMNKEFKKQRLAAASQRPALERESSGLDALASAAVLGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPSCTCNVCLTVKRRFKTLMMRKKKRQSEREAEIAQKNQLSWRTNDESEVDSTTRHLTPVDGSENEARVPNELSSRSQDQVVEVAKGQLDLNSQPDREDMQAGPNTLSMMSLLEEANLPLETYLKQNGLSSLISEQQTNSTSNVQPQTTTESEGRQNEDCCTASAGHEQVGSPEENSEQDRDQNNSVS 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01293 907 SMART B3_2 321 421 IPR003340 GO:0003677
Vivi5g01293 907 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Vivi5g01293 907 Pfam CW-type Zinc Finger 591 633 IPR011124 GO:0008270
Vivi5g01293 907 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 859 - -
Vivi5g01293 907 Gene3D - 299 426 IPR015300 -
Vivi5g01293 907 ProSiteProfiles Zinc finger CW-type profile. 586 636 IPR011124 GO:0008270
Vivi5g01293 907 CDD B3_DNA 319 420 IPR003340 GO:0003677
Vivi5g01293 907 Gene3D - 589 644 - -
Vivi5g01293 907 MobiDBLite consensus disorder prediction 853 907 - -
Vivi5g01293 907 MobiDBLite consensus disorder prediction 740 799 - -
Vivi5g01293 907 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Vivi5g01293 907 MobiDBLite consensus disorder prediction 853 882 - -
Vivi5g01293 907 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Vivi5g01293 907 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01293 Vivi-Chr5 35059620 35068684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01293 1 889 B3 DNA Binding Superfamily AT4G32010 48.936 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi5g01293 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01293 K09287 - gmx:100778833 1525.76