Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01289 ATGCAAGCTCAATTCATCATCATCATCCTTTCTTTGTTTCTTGTTCTTTTTGTTCCATTCCAAGTGATCTCACTATACCAACCTTTCAATGAAGATATGCTAGGATTGATAGTGTTCAAATCAGGTCTAGAAGATCCAAAAAACAAACTTTCTTCTTGGAATGAAGATGATTATAGTCCTTGCAATTGGGAAGGTGTAAAATGTGACCCTATAACAAATAGAGTTTCTTCTCTTGTTCTTGATGGATTCTCTCTTTCGGGCCATATCGGTAAGAGTCTTATGAAGCTGCAGTTCCTTCAAATTCTTTCACTTTCTAGGAACAACTTCACTGGAAAAATAAACCATGATCTTCTTGTCACACTTTGGAATCTAAAAGTTGTTGATTTGAGTGAAAATAGTCTCTCGGGAACTATTCCGGACGAGCTTTTTCAACAATGTTGGTCGTTAAGAGTCTTATCGTTTGCGAAAAACAATCTAACAGGTAAGATTCCCGAGTCTTTGAGCTCGTGCTACTCGTTAGCAAGTTTGAACTTTTCGTCTAATCAATTGAATGGTGAGTTACATTCGGGAATGTGGTTTTTGAAGGAGCTTCAATCGCTTGATCTCTCGAATAATTTTCTTAAAGGTGAAATTCCTGAAGGAGTTCAAAATCTATATGATTTGAGAGAGTTAAGGCTAGGGCGGAATTTTTTCACCGGTAGGATTCCGGAGAATATAGGAAACTGTTTGCTCTTGAAGATGATCGATTTCGGTGATAATCTTCTAACCGATGAAATTCCGGAGTCGATACAAAGACTCACTTCATGCACATTGTTAAACTTGCAAGGGAATTTTCTCAATGGAAGCATTCCACATTGGATCGGCGAATTGAACAATCTTGAGATATTGGATCTTTCTTCTAATAGATTTTTGGGTTCGATTCCGTCTGGGATCGGAGGTCTTAGAAGTTTGCAAGTTTTGAACTTATCTACAAACAATATCTTTGGTTCGATTCCGGCGAGTATTAAAGAGCTTAAATCTTTGTATGTTCTTGACTTAAGTGATAACAAGCTGAATGGAAGCATTCCTCTAGAAATAGAAGGAACAGTTTCACTTATTGAATTGAAGCTTCAAAGGAATTTGTTAGGTGGAAGAATTCCAGTTCAAATTGCAAAATGTTCAGCTCTAAAATCTTTGAATCTTGCACACAACAATCTTATTGGATCAATCCCTGCAACAATTGCAAACCTAACAAATCTTCAATCTGCAGATTTGTCATGGAACAAACTCTCCGGAACTTTACCGAAAAAGCTCACAAATCTTACACATCTTTCCTCATTCAATGTTTCATATAACCATCTTCAAGGTGAATTACCAATTGGTGGATTCTTCAACACAATCACTCCTTCATTTGTTCATGGAAATCCATTGTTGTGTGGTTCTGTTGTTAACCACTCATGCGATCGATCTTATCATCCGAAACCTATTGTTTTGAACCCTAATTCAAATTACAACAGTTCAAGAACTTCTTTACAAAACCATCATCATAAGATAATGCTTAGTATATCGGTTTTTATTGCTATTGGTGCGGCGGTTTCTATTGTTGTTGGTGTTGTTGCTGTTACGGTTTTGAATATCCATGTTAGGTCTTCGGTTTCACATTCTGGTTCTCCGTTTGGATTATCCGGTGGTGAGGATAATAGTTTTTTGCCAGAAAAAGATCCAAAATGCGGAAAATTCGTGATGATTAATGGTGATGATGTTGAGTTTTCCGATGAGGTGAACAATCTTCTTAAAGAAGGTAATGAAATTGGCCGCGGTGGATTTGGAGTTGTTTATTGTGTTGTCCTTCGAGATCAGAATTTTGTTGCGATCAAGAAGCTTTTAGGTTCGAGTATGACAAAATCACAAGAAGAATTTGAGCGAGAAGTTCAAAAGCTTGGTAAGATTAGGCATCAAAATCTTGTGGGACTTGAAGGCTACTATTGGAATTCATCTTTTCAGCTTATAATTTATGAGTATTTTTCTAGAGGGAGTTTGCATAAGCTTCTACATGATGATGATGATCAAAGCAAAATTGAGTTTTCTTGGAGAGCAAGATTCAAGGTTATTTTAGGAATAGCAAAAGGTTTGGCCTATTTACATCAAATGAACATAATCCATTATAACCTAAAATCTACTAATGTTTTTATCGATATTTGTGACGAACCGAAAATCGGAGACTTCAGTTTGGTGAATCTATTACCAATTCTCGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCGCTAGGGTACACGGCCCCTGAGTTTGCGTGTCGCACGGTTAACATAACGGAAAAGTGCGACGTATATGGTTTTGGAATTTTGGTTCTAGAAATCGTGAGTGGAAAAAGACCTGTGGAATATATGGAGGACGACGTCGTTGTTCTATGTGATATGGTGAGAAGTTCGTTGGAAGATGGGAAAGTTGAACAATGTATCGATGAGAAACTTGTTGGTTACTTTTCGCCCGAGGAGGCGATTCCTGTGATTAAATTGGGATTGGTTTGTGCGTCGCAAGTGCCTTCAAGTCGTCCTGATATGGCTAATGTTGTTAACATATTAGAGACGATACAATGTTCTTCAGAAGGACAACAAGAGGAAATACAGTGA 2634 0.3743 MQAQFIIIILSLFLVLFVPFQVISLYQPFNEDMLGLIVFKSGLEDPKNKLSSWNEDDYSPCNWEGVKCDPITNRVSSLVLDGFSLSGHIGKSLMKLQFLQILSLSRNNFTGKINHDLLVTLWNLKVVDLSENSLSGTIPDELFQQCWSLRVLSFAKNNLTGKIPESLSSCYSLASLNFSSNQLNGELHSGMWFLKELQSLDLSNNFLKGEIPEGVQNLYDLRELRLGRNFFTGRIPENIGNCLLLKMIDFGDNLLTDEIPESIQRLTSCTLLNLQGNFLNGSIPHWIGELNNLEILDLSSNRFLGSIPSGIGGLRSLQVLNLSTNNIFGSIPASIKELKSLYVLDLSDNKLNGSIPLEIEGTVSLIELKLQRNLLGGRIPVQIAKCSALKSLNLAHNNLIGSIPATIANLTNLQSADLSWNKLSGTLPKKLTNLTHLSSFNVSYNHLQGELPIGGFFNTITPSFVHGNPLLCGSVVNHSCDRSYHPKPIVLNPNSNYNSSRTSLQNHHHKIMLSISVFIAIGAAVSIVVGVVAVTVLNIHVRSSVSHSGSPFGLSGGEDNSFLPEKDPKCGKFVMINGDDVEFSDEVNNLLKEGNEIGRGGFGVVYCVVLRDQNFVAIKKLLGSSMTKSQEEFEREVQKLGKIRHQNLVGLEGYYWNSSFQLIIYEYFSRGSLHKLLHDDDDQSKIEFSWRARFKVILGIAKGLAYLHQMNIIHYNLKSTNVFIDICDEPKIGDFSLVNLLPILDHCVLSSKIQSALGYTAPEFACRTVNITEKCDVYGFGILVLEIVSGKRPVEYMEDDVVVLCDMVRSSLEDGKVEQCIDEKLVGYFSPEEAIPVIKLGLVCASQVPSSRPDMANVVNILETIQCSSEGQQEEIQ 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01289 877 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 668 871 - -
Vivi5g01289 877 SUPERFAMILY L domain-like 32 268 - -
Vivi5g01289 877 Pfam Leucine Rich Repeat 389 410 IPR001611 GO:0005515
Vivi5g01289 877 Pfam Leucine Rich Repeat 197 218 IPR001611 GO:0005515
Vivi5g01289 877 FunFam Leucine-rich repeat receptor-like protein kinase 29 188 - -
Vivi5g01289 877 SMART LRR_sd22_2 338 359 - -
Vivi5g01289 877 SMART LRR_sd22_2 194 217 - -
Vivi5g01289 877 SMART LRR_sd22_2 290 313 - -
Vivi5g01289 877 SMART LRR_sd22_2 410 436 - -
Vivi5g01289 877 Pfam Protein kinase domain 593 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01289 877 Gene3D Ribonuclease Inhibitor 144 187 IPR032675 -
Vivi5g01289 877 Gene3D Ribonuclease Inhibitor 33 143 IPR032675 -
Vivi5g01289 877 Gene3D Ribonuclease Inhibitor 188 245 IPR032675 -
Vivi5g01289 877 Gene3D Ribonuclease Inhibitor 246 483 IPR032675 -
Vivi5g01289 877 PRINTS Leucine-rich repeat signature 124 137 - -
Vivi5g01289 877 PRINTS Leucine-rich repeat signature 338 351 - -
Vivi5g01289 877 FunFam Inactive leucine-rich repeat receptor-like protein kinase 189 285 - -
Vivi5g01289 877 SMART LRR_typ_2 194 217 IPR003591 -
Vivi5g01289 877 SMART LRR_typ_2 338 362 IPR003591 -
Vivi5g01289 877 SMART LRR_typ_2 121 145 IPR003591 -
Vivi5g01289 877 SMART LRR_typ_2 434 458 IPR003591 -
Vivi5g01289 877 SMART LRR_typ_2 218 242 IPR003591 -
Vivi5g01289 877 SMART LRR_typ_2 290 314 IPR003591 -
Vivi5g01289 877 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 288 483 - -
Vivi5g01289 877 Gene3D Phosphorylase Kinase; domain 1 580 667 - -
Vivi5g01289 877 Pfam Leucine rich repeat 123 183 IPR001611 GO:0005515
Vivi5g01289 877 Pfam Leucine rich repeat 272 327 IPR001611 GO:0005515
Vivi5g01289 877 ProSitePatterns Protein kinases ATP-binding region signature. 597 620 IPR017441 GO:0005524
Vivi5g01289 877 SUPERFAMILY Protein kinase-like (PK-like) 591 864 IPR011009 -
Vivi5g01289 877 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 83 862 - -
Vivi5g01289 877 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Vivi5g01289 877 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 585 667 - -
Vivi5g01289 877 Gene3D Transferase(Phosphotransferase) domain 1 668 877 - -
Vivi5g01289 877 ProSiteProfiles Protein kinase domain profile. 591 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01289 877 SUPERFAMILY L domain-like 217 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01289 Vivi-Chr5 34835641 34840283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01289 5 874 Receptor kinase-like Gene Family AT3G56370 49.378 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vivi5g01289 Pkinase 3.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01289 - - gmx:100813535 1013.45