Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01277 ATGGACATTTTTCTTGGTTGTCTCTTTTCTCTTATATTAGTTTATTCTTTTATAGTAAACCCTTGTTACTGCCTTAACCGAAAATTGTTTAATGTTTCACAAATTCAAAATGATAATAATCAATGGCAAGGGGCAATAGCTACATGGTATGGACCTCCCAATGGTGCAGGATCGGATGGTGGTGCTTGTGGATATACTGATAGTGTAGAGAAACCTCCACTTTCTAGAATGATATCAGCTGGAGGTCCATCTCTTTTTCTTAAAGGAGTAGGATGTGGTGCTTGTTATGAGGTGAAATGCATAGAAAATAATGCATGCTCAGGAAATGCTGTGACTGTGATGATAACTGATGAATGCCCTGAATGTGTTGAATCAGCCCAATTTGATCTAAGTGGAACTGCATTTGGTTCTATTGCAAGTTCTGGCAATGCCGATAATCTTCGCAATGTAGGAAAAATTAATATTCAATACCAAAGGGTTGCATGCTCTTTTGGAAATTCAATAGCCTTTACTATTGATAGTGGAGCAAATCCATACTATTTTGCTACTGAAATAGAATATGAAAATGGAATTGGTGATATTGTACAAGTGGAAATAAACCAATCAAATCAATGGCTTTCAATGCAACGATCATGGGGTGCAAGATGGGCTTTGAACTTAGGTACACAATTGGAAACTCCATTTTCTATTAGACTCACAGAGAGTGGAAATGGAAGTATGAAGAGCATTGTTATTGAGAATGTGATTCCAAGTAATTGGCAACCTGGTCAAGTTTTTCGATCACTTGTTAATTTCTAG 798 0.3672 MDIFLGCLFSLILVYSFIVNPCYCLNRKLFNVSQIQNDNNQWQGAIATWYGPPNGAGSDGGACGYTDSVEKPPLSRMISAGGPSLFLKGVGCGACYEVKCIENNACSGNAVTVMITDECPECVESAQFDLSGTAFGSIASSGNADNLRNVGKINIQYQRVACSFGNSIAFTIDSGANPYYFATEIEYENGIGDIVQVEINQSNQWLSMQRSWGARWALNLGTQLETPFSIRLTESGNGSMKSIVIENVIPSNWQPGQVFRSLVNF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01277 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 261 IPR007117 -
Vivi5g01277 265 SUPERFAMILY Barwin-like endoglucanases 38 164 IPR036908 -
Vivi5g01277 265 SUPERFAMILY PHL pollen allergen 167 261 IPR036749 -
Vivi5g01277 265 Gene3D - 164 265 IPR036749 -
Vivi5g01277 265 Pfam Expansin C-terminal domain 168 250 IPR007117 -
Vivi5g01277 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 167 IPR007112 -
Vivi5g01277 265 Gene3D - 25 163 IPR036908 -
Vivi5g01277 265 PANTHER EXPANSIN-B3 23 265 - -
Vivi5g01277 265 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Vivi5g01277 265 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Vivi5g01277 265 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Vivi5g01277 265 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Vivi5g01277 265 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Vivi5g01277 265 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Vivi5g01277 265 CDD DPBB_EXPB_N 42 162 - -
Vivi5g01277 265 SMART dpbb_1 78 157 IPR007112 -
Vivi5g01277 265 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Vivi5g01277 265 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Vivi5g01277 265 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Vivi5g01277 265 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576|GO:0019953
Vivi5g01277 265 PRINTS Major pollen allergen Lol pI signature 237 254 IPR005795 GO:0005576|GO:0019953
Vivi5g01277 265 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Vivi5g01277 265 PRINTS Major pollen allergen Lol pI signature 100 110 IPR005795 GO:0005576|GO:0019953
Vivi5g01277 265 Pfam Lytic transglycolase 79 157 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01277 Vivi-Chr5 34034602 34036021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01277 20 265 Expansin Gene Family AT1G65680 51.793 5.21e-91 268