Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01275 ATGGCATTGATTGTGGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAAAAAGGCTTTGGATGTGGAAGAGCATTGGGAGGACATATGAGAGCTCATGGGATAGGCGACGAAAACGGTCAAATGGACGACGATGATCCGGCGAGCGATTGGGAAGGTGGCAATGCCAATAATATTGTTCCTCAAACAAGTAACAAGCGCATGTATTCTCTTAGAACAAATCCTAATAAGCAAAAAAGTTGTAGGGTATGTGAGCATTGTGGCAAGGAATTTTTCTCTTGGAAGGCTTTTCTCGAACACGGAAAATGCAACTCAGATGAAGCGGATGAAGAGTCTCCTGAATCCTCTCCAGAATCAAACGTCATGGCCGACGATGGCGACGGCGATGGCGCCGATGGGAGAAGATGTGGTTGGTCCAAAAGAAAAAGGTCAATGCGAACTAAAGTAGGTAGTTTAAATAATAATTACATTTGTCCTTCAAGCGAAGAAGAAGACCTAGCAAATTGTTTAATGATGTTATCAAATGCTATTGTTAATCCTCTCGAGGCGGCGGAGCCGGAAGAATCATGTGCCTCAGCTTGTAGAGATGAAGAAAGAAGAAACCCTATGAATTTCATTGCACCATTGTCTTATAGAATCCCTTATGAAACAAACAACAATAACAACAACAACATCAACAACAACAAAGCCAAAGGTGTTGCAAAAGGTTTATTTGAATGCAAAGCATGCAAAAAAGTCTTCAACTCCCACCAAGCTTTAGGTGGCCATAGAGCAAGTCACAAAAAAGTTAAAGGATGTTTTGCTGCAAGACTTGATCAAAACCTTGATGAAACCATAGCTGAGGATGATGTCATGACACATGATGAGTTCTTCCCTCCAAAATCAATCTCATCTCTACAATATGATCAAGGAACCTCTAGTAACTCTACTTTAATGCCTTCTTCTTCTTCCAAGAGAAAATCAAAAGTGCATGAATGCTCAATTTGCCATAGGAGTTTCTCTTCTGGACAAGCATTAGGAGGTCACAAAAGATGTCATTGGATAACATCAAATGCACCCGACACTTCAACATTGGCAAGGTTTCAACAATTTCAAGACCATATGGAACAAATACCTAAGTTTGATAATTCTTCTGAGCCAATTGATCTTAAACTTGATCTTAATCTTCCAGCTCCTACCAATACACAAATTTATATGCAATCATGGGGTGCAACTGCAAACCCTAGTGCAAGTGCAATAAAGGACAATAATAATAATAATATTATTAAAGAAGATAATAGTAGCCAATGTATGATTCAACAAAATCAAAATAACAACCAAGTTGATCAAAATAATGACACTCATGATGAAAACAACAAAAACAACAACAACCTTAATTCTTTGATACAAAATGTTGATAATAATGAAGATGATAGTAAGGTTAAGTTGGCAAAATTAAGTGAACTAAAAGATGTAATCAATATTGGAGGAAGTTCTTCACCTTGGTTGCAGGTTGGAATTGGTGCAACAACTGATGTGAGGAATGATACGTAA 1539 0.3775 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDENGQMDDDDPASDWEGGNANNIVPQTSNKRMYSLRTNPNKQKSCRVCEHCGKEFFSWKAFLEHGKCNSDEADEESPESSPESNVMADDGDGDGADGRRCGWSKRKRSMRTKVGSLNNNYICPSSEEEDLANCLMMLSNAIVNPLEAAEPEESCASACRDEERRNPMNFIAPLSYRIPYETNNNNNNNINNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDQNLDETIAEDDVMTHDEFFPPKSISSLQYDQGTSSNSTLMPSSSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDHMEQIPKFDNSSEPIDLKLDLNLPAPTNTQIYMQSWGATANPSASAIKDNNNNNIIKEDNSSQCMIQQNQNNNQVDQNNDTHDENNKNNNNLNSLIQNVDNNEDDSKVKLAKLSELKDVINIGGSSSPWLQVGIGATTDVRNDT 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01275 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 326 348 IPR013087 -
Vivi5g01275 512 Gene3D Classic Zinc Finger 11 105 - -
Vivi5g01275 512 SUPERFAMILY beta-beta-alpha zinc fingers 239 348 IPR036236 -
Vivi5g01275 512 MobiDBLite consensus disorder prediction 441 466 - -
Vivi5g01275 512 Gene3D Classic Zinc Finger 237 348 - -
Vivi5g01275 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Vivi5g01275 512 SUPERFAMILY beta-beta-alpha zinc fingers 13 103 IPR036236 -
Vivi5g01275 512 Coils Coil 453 473 - -
Vivi5g01275 512 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Vivi5g01275 512 Pfam C2H2-type zinc finger 325 350 - -
Vivi5g01275 512 Pfam C2H2-type zinc finger 13 35 - -
Vivi5g01275 512 Pfam C2H2-type zinc finger 240 264 - -
Vivi5g01275 512 ProSitePatterns Zinc finger C2H2 type domain signature. 328 348 IPR013087 -
Vivi5g01275 512 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Vivi5g01275 512 SMART c2h2final6 13 35 IPR013087 -
Vivi5g01275 512 SMART c2h2final6 326 348 IPR013087 -
Vivi5g01275 512 SMART c2h2final6 84 104 IPR013087 -
Vivi5g01275 512 SMART c2h2final6 240 262 IPR013087 -
Vivi5g01275 512 PANTHER OS02G0659100 PROTEIN 2 509 - -
Vivi5g01275 512 MobiDBLite consensus disorder prediction 38 63 - -
Vivi5g01275 512 MobiDBLite consensus disorder prediction 106 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01275 Vivi-Chr5 33950424 33951962 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01275 136 391 C2H2 Transcription Factor Family AT1G02040 36.782 2.27e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g01275 zf-C2H2_6 1.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01275 - - ahf:112720137 659.833