Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01270 ATGATGGAAAAACACAAGTGCAAATATTGTTATAGAAGTTTCTCCAACGGAAGAGCATTAGGCGGACACATGAGATCACACATGATGAACCTACCAATTCCTCCCAAACCAAACGACTCACCACCATCACCACCGCCACAACCACCACCACCACCGCCAACGATTCAACTCAGTTTCGAAGCCGAGTCAGATTCATCTCCTTCATCCTCATCTCTCTATAGCCTAAGAGAGAATCCAAAGAGAAGCTTCATTTTCACAGATCCCAATCAATTCATCGACGCCGGTTCCATAATTCTCCAACAAGAAAGCGAAACCGAAACCGAAACTGAGTCGTCGAAGAATCCAACTCGTCCACGATCCAAACGAGTCAGAAAACTCGACACGGCCAAACCGAATGACTCGGTGCTGAGTTCTTCTTCGGATATAACTACCGAAGAAGACATCGCTTTTTGTCTCATGTTGCTCTCTCGCGACAATAACAACAATTGGCGATCTCAAACACATAAACAAACACAAACACAAAGACAACAGTACAATTATCATGATCAAGATCATGAACAACTAGAACAGCATCATTATTACGTCGATGAAGACGAAGACGACGCTGACGTAGAAGTCGAAGAAATCGAAGAAGAAGAAGAAAGTGAAGCTGAATCTGAGGAGGAACTGAAACCGATGAAGAAAGTACGAGGGAGATACAAATGCGACACGTGTAACAAAGTGTTTCGATCTTATCAAGCACTAGGAGGACACAGAGCGAGTCACAAGAAAACTAAACAACTTGCTGGCGATTCATCTTCACAGCAGAATGAGAAAATCAACATTGAAAACATTAATGTTAATATTAATGTTAATGTTGAAAAGAAAATTCATGAGTGTCCTGTTTGTTTTAGAGAATTTGCTTCAGGTCAAGCACTTGGTGGACATAAGAGAACACATGGTATTGGAACATCGTTATCAGCAGCATCAGCTTCAACATCGACAACAACAATAGCAGCGGTTACGGCATCAGCAGCAGTAGCAACAAACGTTGAGGTTGTTGTTCGAAGTTCTGCGAAATTCGGAGATAGTTTGTTAGATCTAAATCTTCCTGCTCCTATGGATGATGGTGATGGTGATGGTGGTGATGAAGGTGGTTCTGCAGTTTCCGATTCATAA 1158 0.4223 MMEKHKCKYCYRSFSNGRALGGHMRSHMMNLPIPPKPNDSPPSPPPQPPPPPPTIQLSFEAESDSSPSSSSLYSLRENPKRSFIFTDPNQFIDAGSIILQQESETETETESSKNPTRPRSKRVRKLDTAKPNDSVLSSSSDITTEEDIAFCLMLLSRDNNNNWRSQTHKQTQTQRQQYNYHDQDHEQLEQHHYYVDEDEDDADVEVEEIEEEEESEAESEEELKPMKKVRGRYKCDTCNKVFRSYQALGGHRASHKKTKQLAGDSSSQQNEKINIENINVNINVNVEKKIHECPVCFREFASGQALGGHKRTHGIGTSLSAASASTSTTTIAAVTASAAVATNVEVVVRSSAKFGDSLLDLNLPAPMDDGDGDGGDEGGSAVSDS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01270 385 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Vivi5g01270 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Vivi5g01270 385 Gene3D Classic Zinc Finger 230 313 - -
Vivi5g01270 385 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 370 IPR044303 GO:0006355
Vivi5g01270 385 MobiDBLite consensus disorder prediction 34 56 - -
Vivi5g01270 385 MobiDBLite consensus disorder prediction 22 76 - -
Vivi5g01270 385 MobiDBLite consensus disorder prediction 362 385 - -
Vivi5g01270 385 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Vivi5g01270 385 MobiDBLite consensus disorder prediction 249 268 - -
Vivi5g01270 385 Coils Coil 195 222 - -
Vivi5g01270 385 MobiDBLite consensus disorder prediction 58 76 - -
Vivi5g01270 385 MobiDBLite consensus disorder prediction 101 138 - -
Vivi5g01270 385 MobiDBLite consensus disorder prediction 106 129 - -
Vivi5g01270 385 Pfam C2H2-type zinc finger 5 28 - -
Vivi5g01270 385 Pfam C2H2-type zinc finger 232 257 - -
Vivi5g01270 385 Pfam C2H2-type zinc finger 291 313 - -
Vivi5g01270 385 ProSitePatterns Zinc finger C2H2 type domain signature. 293 313 IPR013087 -
Vivi5g01270 385 SUPERFAMILY beta-beta-alpha zinc fingers 4 32 IPR036236 -
Vivi5g01270 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Vivi5g01270 385 SUPERFAMILY beta-beta-alpha zinc fingers 232 313 IPR036236 -
Vivi5g01270 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 291 313 IPR013087 -
Vivi5g01270 385 SMART c2h2final6 291 313 IPR013087 -
Vivi5g01270 385 SMART c2h2final6 233 255 IPR013087 -
Vivi5g01270 385 SMART c2h2final6 5 27 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01270 Vivi-Chr5 33766596 33768216 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01270 2 369 C2H2 Transcription Factor Family AT3G60580 34.465 2.10e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g01270 zf-C2H2_6 6.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01270 - - psat:127105004 451.44