Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01241 ATGTTGTTTTCCATTCCATTGTTTGTTTTCTTTTCAAGCATTTGCTTTTTAACCGAGCAAATGGAAAATGAAGACATTGAAATAGTGAAACTCTCAAGTCATCAAGGTGAGCAACCTCTTTTGAACGTTCAAAGAAAAGAGATATTTAAAGAATGTCGAAGAAATCATGCTTCTAGCATTGGAGGCTTCGCCGTTGATGGTTGTTGCGAGTTTTTACCCGCTGGAGTTGAAGGTACTTTCGAGTTTTTTAAATGTGCTGCATGTAATTGTCACCGAAATTTTCATCGTAAAGAATTTGTCACAAGAAATCAAACTCATTTTCCGTCCAATACCATTTACTACCCTTCCCCAACTCCAATCTCCGCATTTTTTCCAACTACCAATAGTTACATCCATATGACTGGCACGTCGAGGGGGACTACAACATCCCTCGACTTGCCTAATGATATTGTCCATGTTACTGAATGCGGTGATACTAGTGGTGGTGGAGAAATGCCGACTAGCTCTAAAAAAAGATTTAGAACAAAGTTCACTCGTGAACAAAAGAAGAAAATGTTGGATTTTGCTGTGAAATTAGGTTGGAAGATTCGCAAAGAAGATGAGAATGTTGTCGAGAAATTTTGTAGTAAAATTGGGGTGAAGTTTCAAGCTTTTAGAGTGTGGATGCTTAACAATAAACGCACCATTGGAAAACAATCTTAG 702 0.3789 MLFSIPLFVFFSSICFLTEQMENEDIEIVKLSSHQGEQPLLNVQRKEIFKECRRNHASSIGGFAVDGCCEFLPAGVEGTFEFFKCAACNCHRNFHRKEFVTRNQTHFPSNTIYYPSPTPISAFFPTTNSYIHMTGTSRGTTTSLDLPNDIVHVTECGDTSGGGEMPTSSKKRFRTKFTREQKKKMLDFAVKLGWKIRKEDENVVEKFCSKIGVKFQAFRVWMLNNKRTIGKQS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01241 233 Pfam ZF-HD protein dimerisation region 48 99 IPR006456 -
Vivi5g01241 233 Gene3D - 156 231 - -
Vivi5g01241 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 49 98 IPR006456 -
Vivi5g01241 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 228 - -
Vivi5g01241 233 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 49 98 IPR006456 -
Vivi5g01241 233 NCBIfam homeobox domain, ZF-HD class 170 226 IPR006455 -
Vivi5g01241 233 SUPERFAMILY Homeodomain-like 157 231 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01241 Vivi-Chr5 32894543 32895445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01241 49 229 ZF-HD Transcription Factor Family AT4G24660 43.646 5.14e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi5g01241 ZF-HD_dimer 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01241 - - vvo:131601515 476.863