Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01238 ATGGATGTTGTCAAAATCCTCTCAACTGATACAATCAAGGCATTAAAATTCAGTGATAAAGAAATCGATTTGACTCCATGGGATCTCCAGTATTTTTCTGGTACACCCAACAAAAAAGGCCTTCTTTATCACCACCCAGTAGTATCAAACCAAATTCAACAGTTAAAACACTCTTTATCATATGCACTTGAATTTTTTCAACCTCTTGCAGGTCGTCTCAAAATAACGGAACACAAAGACGATATTATCTCGTGTTCCGTTATTTGCAACAATGCAGGTGTGCTCTTTACTCATGCATCTGTAGAAAATACTTGTGTTGCAGATATCTTAGAACCTACCTACGTTCCTTCAATCATCGGTTCATTTTTCCCTTTTGTCGGGGTTAAGAACTATGAAGGAACGTCACAGCCGTTGTTGGCTGTTCAAGTCACGGAGCTAGTCGATGGCATCTTCATTGGTTGCACATTTAACCATGTGGTTGTTGATGGAAATTCCATTTGGCATTTCATTAATTCATGGGCTGAAATTTCACGTGGTTCTTGTCATCATCAAATATCCAAACTTCCAATATTGGATCGTTGGTTTCCAGATGGTGTTCAATGTCCCATACAATTTCCTTTTACGATAGAGCCACAAAAAAATCACTCTGATGGGTCGAGTTCTTCACCATTTGATGAAGAACCCAATCTATCAGAGAGAATATTTCATTTCTCAAAGGAGAAAATCTTGCAAATGAAATCAAATATCAATAAACAAATTGATAATACTATCAAAATATCTTCCTTACAAGCGATTTTAACTCATGTTTGGTGCTCTTTCGTTCGTTCCAAACAATTTAATCCACAAGAAGAAACCCATAACATATGTTTGATAGGGGTTGGACCACGAATTGTTCCACCATTGCCAGAAGGTTATTTTGGAAATGCAATTATAGGTTGTATAACTACAATGAAAGCCGAAGATTTGTTGAAGGAAGATGGTGTATGCAACGGCGCGAGTGAGATGAACAAGTTAATTGCTTCACACTCTAATGAGAAGATAAAGAATCACTACAAATCTTGGTTGAAAAATCCAAATATTATTAAGCGTAGTAGCAAGCCGAAAGATAATTTCTTACTCATAAGCAGTTCTCCTCGTTTTGATGTTTATGGTAATGACTTCGGATGGGGAAAGCCAGTGGCAGTTCGGAGTTCAAATAAATTAAATGGAGTTGTTAGTGTGTTTGCTGGAATAGAAGAAGGAAGTATTGATTTGCAAATCCGTCTTCCTTTCAATATTTTAGAAGCAATGGGAAATGACTTTAGTTCATAA 1311 0.3677 MDVVKILSTDTIKALKFSDKEIDLTPWDLQYFSGTPNKKGLLYHHPVVSNQIQQLKHSLSYALEFFQPLAGRLKITEHKDDIISCSVICNNAGVLFTHASVENTCVADILEPTYVPSIIGSFFPFVGVKNYEGTSQPLLAVQVTELVDGIFIGCTFNHVVVDGNSIWHFINSWAEISRGSCHHQISKLPILDRWFPDGVQCPIQFPFTIEPQKNHSDGSSSSPFDEEPNLSERIFHFSKEKILQMKSNINKQIDNTIKISSLQAILTHVWCSFVRSKQFNPQEETHNICLIGVGPRIVPPLPEGYFGNAIIGCITTMKAEDLLKEDGVCNGASEMNKLIASHSNEKIKNHYKSWLKNPNIIKRSSKPKDNFLLISSSPRFDVYGNDFGWGKPVAVRSSNKLNGVVSVFAGIEEGSIDLQIRLPFNILEAMGNDFSS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01238 436 Gene3D - 227 435 IPR023213 -
Vivi5g01238 436 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 433 - -
Vivi5g01238 436 Gene3D - 1 201 IPR023213 -
Vivi5g01238 436 Pfam Transferase family 4 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01238 Vivi-Chr5 32827342 32828652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01238 53 393 Monolignol Biosynthesis Gene Families AT5G48930 28.852 4.68e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01238 - - vvo:131606449 687.182