Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01224 ATGGACGATAACGCATTGAAAGATGAGCAGCTTGTTGTAATCGATCAACAAGAAATCTATGAATCCTTTGTTTGCTGCGTTTGCCTGGATCTTTTATACAAGCCCATTGTGCTATCTTGTGGTCATGTATCATGTTTTTGGTGTGTCCATAAATCGATGAATAGTTCGCGCGAATCCCATTGTCCAGTTTGTAGGAATCCATACCATCACTTTCCCACAATCTGTGAAATGCTTCACTTTTTGCTTCTTAAGACATATCCTGCAGCTTACAAGAGAAGGGAAAACCAGACACTTGAGGAAGAAGAGGAAATGGATTCCTTCTCCCCTCAAATTTTATGTGATTGTCCGGGGAATTCGCCTACCTCTACTATCATAAATCAGGCATCTAATTCATGCAGCACAGAATCTTTTGAAATTATGGAGCAAACAGGGTCTGCAAATCATAAAGGAGATGAAGCAATCATTTCTGAACACTCTTCTGACAGGAAACCTCAAATTACAGGAACTTCTGTTGAGGGAAAAAGATTGCCTCAAAATGAGCACAATCAGCAACCAAAAATATTAGTTACAGATTTAATGTGTCCAATATGCAAACAACTGCTGATTCATCCTGTTGTTCTTAATTGTGGTCATGTACATTGTCAGACATGTATTACCGACTTATCTCTTGAAATGCTTAGATGTAAAGTTTGTCAAAGTCCACATCCCAGAGGATTTCCCAAAGTTTGTTTGGCTCTTGACCAATTTTTAGAGAAGCAATTTCTAGAAGAGTACAATCAGAGAAGAGATGCAATTCAACTTGGCCAAATCAAAGTCCAACCTGAGACCACATCTTGTTCATTGCCGAAGGACAGCGGAGAAAAGATATCTTGGTGGTCTAATCCTGAATTGTTGGTTCACAGAGGAGTTGGTTGTGATTTTTGCGGGATGTACCCAATAATCGGGGACAGATATAGGTGCGCTGACTGTGAAGAAAGTATCGGTTTTGATCTTTGTGGTGATTGCTATAAGAACCGTTCAAAGCGTCCAGGACGATTTAATCAAAAGCACACACCTGACCACAAGCTCGAGCTTGTACAATATCGAAGGATGCTAATAAGCCGTGGACAAGATTCTTCGGATTTAATAGTTATACCAGATGATCCTGCTTCCTCCACCGATGAAGATGAAAACCAGACCGACTCTGACGCCACCAACTGA 1200 0.4058 MDDNALKDEQLVVIDQQEIYESFVCCVCLDLLYKPIVLSCGHVSCFWCVHKSMNSSRESHCPVCRNPYHHFPTICEMLHFLLLKTYPAAYKRRENQTLEEEEEMDSFSPQILCDCPGNSPTSTIINQASNSCSTESFEIMEQTGSANHKGDEAIISEHSSDRKPQITGTSVEGKRLPQNEHNQQPKILVTDLMCPICKQLLIHPVVLNCGHVHCQTCITDLSLEMLRCKVCQSPHPRGFPKVCLALDQFLEKQFLEEYNQRRDAIQLGQIKVQPETTSCSLPKDSGEKISWWSNPELLVHRGVGCDFCGMYPIIGDRYRCADCEESIGFDLCGDCYKNRSKRPGRFNQKHTPDHKLELVQYRRMLISRGQDSSDLIVIPDDPASSTDEDENQTDSDATN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01224 399 SUPERFAMILY RING/U-box 13 76 - -
Vivi5g01224 399 MobiDBLite consensus disorder prediction 158 177 - -
Vivi5g01224 399 SUPERFAMILY RING/U-box 291 359 - -
Vivi5g01224 399 MobiDBLite consensus disorder prediction 383 399 - -
Vivi5g01224 399 ProSiteProfiles Zinc finger RING-type profile. 194 232 IPR001841 -
Vivi5g01224 399 SMART ring_2 194 231 IPR001841 -
Vivi5g01224 399 SMART ring_2 25 64 IPR001841 -
Vivi5g01224 399 FunFam E3 ubiquitin-protein ligase PRT1 16 111 - -
Vivi5g01224 399 SUPERFAMILY RING/U-box 187 255 - -
Vivi5g01224 399 ProSiteProfiles Zinc finger ZZ-type profile. 300 364 IPR000433 GO:0008270
Vivi5g01224 399 FunFam E3 ubiquitin-protein ligase PRT1 294 359 - -
Vivi5g01224 399 SMART zz_5 299 356 IPR000433 GO:0008270
Vivi5g01224 399 MobiDBLite consensus disorder prediction 373 399 - -
Vivi5g01224 399 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Vivi5g01224 399 PANTHER UNCHARACTERIZED 16 362 - -
Vivi5g01224 399 MobiDBLite consensus disorder prediction 160 177 - -
Vivi5g01224 399 Gene3D - 295 360 IPR043145 -
Vivi5g01224 399 Pfam Zinc finger, C3HC4 type (RING finger) 24 69 - -
Vivi5g01224 399 Pfam RING-type zinc-finger 194 219 IPR027370 -
Vivi5g01224 399 Pfam Zinc finger, ZZ type 300 341 IPR000433 GO:0008270
Vivi5g01224 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 114 IPR013083 -
Vivi5g01224 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 261 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01224 Vivi-Chr5 32169874 32179767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01224 12 65 C3H Transcription Factor Family AT1G74990 36.364 3.93e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01224 - - tpra:123920334 642.884