Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01213 ATGGCACTTTTCTCAACTAACATCAAGCTGCTTGTTGTGCATCATGACACCGTTCTTCTTGATCAAATTCAACAAATGTGTGACCGATGTCATTATCAACTAACCAAATGCACTTCACCTTATTATGCTCTCAATCTTCTTGCGCAAAGAAATGGTTATTTTGATATGATGCTGATTGATGTTTGTATGCCATACATGGATTCCTATGAGTTTCTTCAATATGTAACCCTACAACACAGAATCCCTGTCATTGTGATATCTTCTGATGGCACAAAAAGTTCTGTCATGAATTCTGTAATTTACGGAGCTTGTGATTACTGGGTTCAACCTTTACAAGAAAAACAATTCAAGACCATGTGGCAGCACGTTGCAAGAAACAATTTCAATGAGAATAAAGCTGAACATCAAGTTCTTGGATTCTTGGATGCTCAAAGCCCTAAAGAAGATGAAGTTGTTGGATTCTTGACAGCACAAAGCCCTAAAGAACCTGATGCTGTTGGATTCATGGATGCTCAAAGCCCTAAAGAACCTGATGTTCTTAGATTCTTGAAATCGCAAAGCCCTAAAGAAGATGAAGTTGTTGGATTCTTGGAGGCTCCTGAGCATGAAAGAAAACGGGAGAGAGAAGATGATAAACCTCCAAAAGAAACAAGTGCAAAAAAGAGTCGGTTATCATGGACGCCGCAACTGCACCAACAGTTTCTAAATGCAGTGAACCAACTTGGCTTTGATGCGGCAAAACCTAGAAAGATTCTCAAAAGAATGGATGTTTGTGGTTTAACAATAGCTCAGGTTGCAAGTCATTTGCAGAAATATAGAAACTATTTGAAGGGACCATCTTGTGGAAAAAAGTCAAACAAAAGTCAAAGAATGGACACTCCAACTAAAACAGCATCAGAAACTGAAGATGCTAACTCAGTGTTACATCATGAGGACCAAACTTGTCAACTGAACTCAACCCTTCAAAGTTACAATATCTCTGAAACACAACAACATTCAACTGATGTTACTGATTATCAAGATTCTGACATCGGCTATAATTATGAAGCACAACAGCATTCAATTGATCATCAAGTTTCCGATATTAGTTTTCCTGATCCATCTAACATGTTCATAGATTATGATGAGTTAATGTCGTTATTATCATGCTAG 1152 0.3776 MALFSTNIKLLVVHHDTVLLDQIQQMCDRCHYQLTKCTSPYYALNLLAQRNGYFDMMLIDVCMPYMDSYEFLQYVTLQHRIPVIVISSDGTKSSVMNSVIYGACDYWVQPLQEKQFKTMWQHVARNNFNENKAEHQVLGFLDAQSPKEDEVVGFLTAQSPKEPDAVGFMDAQSPKEPDVLRFLKSQSPKEDEVVGFLEAPEHERKREREDDKPPKETSAKKSRLSWTPQLHQQFLNAVNQLGFDAAKPRKILKRMDVCGLTIAQVASHLQKYRNYLKGPSCGKKSNKSQRMDTPTKTASETEDANSVLHHEDQTCQLNSTLQSYNISETQQHSTDVTDYQDSDIGYNYEAQQHSIDHQVSDISFPDPSNMFIDYDELMSLLSC 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01213 383 MobiDBLite consensus disorder prediction 190 226 - -
Vivi5g01213 383 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Vivi5g01213 383 NCBIfam myb-like DNA-binding domain, SHAQKYF class 221 274 IPR006447 GO:0003677
Vivi5g01213 383 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 305 IPR045279 GO:0009736
Vivi5g01213 383 MobiDBLite consensus disorder prediction 278 307 - -
Vivi5g01213 383 MobiDBLite consensus disorder prediction 281 302 - -
Vivi5g01213 383 Gene3D - 217 278 - -
Vivi5g01213 383 FunFam Two-component response regulator 217 279 - -
Vivi5g01213 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 218 277 IPR017930 -
Vivi5g01213 383 MobiDBLite consensus disorder prediction 194 219 - -
Vivi5g01213 383 SUPERFAMILY Homeodomain-like 219 277 IPR009057 -
Vivi5g01213 383 Pfam Response regulator receiver domain 11 118 IPR001789 GO:0000160
Vivi5g01213 383 Pfam Myb-like DNA-binding domain 224 273 IPR001005 -
Vivi5g01213 383 CDD REC_typeB_ARR-like 11 124 - -
Vivi5g01213 383 Gene3D - 4 133 - -
Vivi5g01213 383 SUPERFAMILY CheY-like 7 131 IPR011006 -
Vivi5g01213 383 SMART REC_2 8 120 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01213 Vivi-Chr5 31655445 31656779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01213 4 274 Response Regulator Gene Family AT4G16110 33.333 6.07e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi5g01213 Response_reg 1.8e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01213 - K14491 vvo:131604459 774.622