Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01203 ATGTCTATCGTTGAAGAAAAGGTGACACCGCATTCTCCGGTTGGAAAAGGGTGTTCACAATGTGATGTTGCTACATCTAGCAGCGATTACTCGGAATGTAACTTATGCTGCAAGCATCATCGGTCGGTGAAAAATGACTTACTTGCGCCACAAGTAAATGATAAAAAGAAGCATATATTTGGTGTTTCCACTCGTCTATGCAAGCATTTTGTTGGTGGTTTGGAAACAACCAACATGAACAAGAAAATATTATTAACATTTCGTCATGATCCCGTCTTTTCTTTGGTCTATCACTTTCATAAACAACAGCATTTGCAAAGAGCGAAAATGACACTAAATAGGTCTGAATCATTTCCTTTTCCTTACTCATTATCAAGACGGAAAGAAAGATTATACACCGACAACGAAACAAAAAAGCCGGTTCTATTTGTGTCATCAAAAACTGCATGTGAACAGGTCATGCCATCGGTAGCAAAAGCGAAAGTAAATGGAAATTTCAATATGAATGAAGCATTTATAATAGTAAAAGATGTTAAGTTTTCTTCGGTATCTGCAAAGGGTCAAAATAGTCTCAAACAAAAAATTGAGAATGTAACTGGCGAGAGGGGTAAAGAAAAGATTCGCGTTGCAATGGATTCTGTCATTCATAAACTTCCTCAAGGACAAAGGCTATCGGATCGATTGAAGAATGAAATTTTGAAGAAATTGAAAGAACCTATTATTAAAAGAGAAGTTCAACGCAAAAACTCCATAAGAAGGACCGTGTCGCTTCAAGAACCGCTCGAAAGTTATTGTAAAACGCTAGAGAGCAGCTTCAAAACAGAAGCAAGAGCCTCTCAATCAGAGAAACTAAAGTTAGAAAAACAAAGGTCGCATTCGCCGTTGAGAATGTTGATACCTCTTCAAAGAATTCTTTCATTACCTGATCTTCAATCTTTTTCCTATACTTCTCAGAAGGGAGATTTTTCTGATTTTACCCCGGAAAATCAAATCATCATAGATAAAAATGATTTGGTGATCAGTAATATCTTGAAATCATCAGGTTCAATTTCTAAGTCAGTTTCTACCGACAAACCAAACAATGTTGCTCAAAAAACGGAGATTCGAACCAACAAGTTGACCTATGAGATTCCTCAAATTCATGTGGACACCAAACTCAAAGATGAGTTCAACTATGTGAAATATGTACTTGAAATATCTGGATTCACAACTAATGATAGCACTTCAGCATGGCATTCTAGAGACACTCCACTTGATCCATCACTATATGAAGAAATGGAAAATGATCCTGAATTTTGTGGTAAAGTAAGTGGTGAATGTAATCACCATGTATTGTTTGATTTGATTAATGAGACAATGTTGGAGATTTATGGTAGGTCATATGGTTACCTTCCTTCTTCTATTGTAGGGTGTCATGTTCTCCATAAAGTATGGACTCTTATGAGTAAGTCTTTGTGTTTAGGATATAAAGTTGGCCAAAAGATAGATGATCATGTAAGTAGGGATTTAGCAAGAAATGATGGGTGGGTTAACATTCAATTTTATGATGAATGTTTTGGTTTGGAGGTGGATCACATGATTTTTCATGATCTACTTAAGGAAATAGTGTTGGATTTAGCTTTGTTATGA 1629 0.3597 MSIVEEKVTPHSPVGKGCSQCDVATSSSDYSECNLCCKHHRSVKNDLLAPQVNDKKKHIFGVSTRLCKHFVGGLETTNMNKKILLTFRHDPVFSLVYHFHKQQHLQRAKMTLNRSESFPFPYSLSRRKERLYTDNETKKPVLFVSSKTACEQVMPSVAKAKVNGNFNMNEAFIIVKDVKFSSVSAKGQNSLKQKIENVTGERGKEKIRVAMDSVIHKLPQGQRLSDRLKNEILKKLKEPIIKREVQRKNSIRRTVSLQEPLESYCKTLESSFKTEARASQSEKLKLEKQRSHSPLRMLIPLQRILSLPDLQSFSYTSQKGDFSDFTPENQIIIDKNDLVISNILKSSGSISKSVSTDKPNNVAQKTEIRTNKLTYEIPQIHVDTKLKDEFNYVKYVLEISGFTTNDSTSAWHSRDTPLDPSLYEEMENDPEFCGKVSGECNHHVLFDLINETMLEIYGRSYGYLPSSIVGCHVLHKVWTLMSKSLCLGYKVGQKIDDHVSRDLARNDGWVNIQFYDECFGLEVDHMIFHDLLKEIVLDLALL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01203 542 PANTHER PROTEIN TRM32 351 539 IPR044257 -
Vivi5g01203 542 Pfam Domain of unknown function (DUF4378) 389 534 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01203 Vivi-Chr5 31556070 31558158 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01203 62 528 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 30.893 5.71e-52 188