Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01201 ATGGGAAGGCAGAAGCATTCTGATTCATATCCTGAGTATAGTAAAAGCCTCTTTCATATTATTAAGCATCATCCTTTATGTCACCATTTCATACAAAAAAGACAGACATACAACAACTGCGACGACGACGAAAGAACGGTTCCAGGAACTGTAATTGCACAAAGGGATGAAGCTTTCTCTTGTGACAAAAGAAAGAACATAAGCCTTGACAAGTTAAGCAACTTAAATGTTGAAGAAAAGGTGACACCGCATTCTCCGGTTGGAAAAGGATGTTCACAATGTGATGTTGCTACATCTAGCAGCGATTACTCGGAATGTAACTTATGCTGCAAGCATCATCAATCGGTGAAAAATGACTTACTTGCGCCACAAGTAAATGATAAAAAGAAGCATATATTTGGTGTTTCCACTCGTCTATGCAAGCATTTTGTTGGTGGTTTGGAAACAACAAACATGAACAAGAAAATATTATTAACATTTCGTCACGATCCCGTCTTTTCTTTGGTCTATCACTTTCATAAACAACAGCATTTGCAAAGAGCGAAAATGACACTAAATAGGTCTGAATCATTTCCTTTTCCTTACTCATTATCAAGACGGAGAGAAAGATTATACACCGACAACGAAACAAAAAAGCCGGTTCTATTTGTGTCATCAAAAACTGCATGTGAACAGGTCATGCCATCGGTAGCAAAAGCGAAAGTAAATGGAAATTTCAATATGAATGAAGCATTTATAATAGTAAAAGATGTTAAGTTTTCTTCGGTATCTGCAAAGGGTCAAAATAGTCTCAAACAAAAAATTGAGAATGTAACTGGCGAGAGGGGTAAAGAAAAGATTCGCGTTGCAATGGATTCTGTCATTCATAAACTTCCTCAAGGACAAAGGCTATCGGATCGATTGAAGAATGAAATTTTGAAGAAATTGAAAGAACCTATTATTAAAAGAGAAGTTCAACGCAAAAACTCCATAAGAAGGACCGTGTCGCTTCAAGAACCGCTCGAAAGTTATTGTAAAACGCTAGAGAACAGCTTCAAAACAGAAGCAAGAGCCTCTCAATCAGAGAAACTAAAGTTAGAAAAACAAAGGTCGCATTCGCCGTTGAGAATGTTGATACCTCTTCAAAGAATTCTTTCATTACCTGATCTTCAATCTTTTTCCTATACTTCTCAAAAGGGAGATTTTTCTGATTTTACTCCGGAAAATCAAATCATCATAGATAAAAATGATTTGGTGATCAGTAATATCTTGAAATCATCAGGTTCAATTTCTAAGTCAGTTTCTACCGAGAAACCAAACAATGTTGTTCAAAAAACGGAGATTCGAACCAACAAGTTAAACTATGAGATTCCTCAAATTCATGTGGACACCAAACTCAAAGATGAGTTCAACTATGTGAAATATGTACTTGAAATATCTGGATTCACAACTAATGAAAGCACTTCAGCATGGCATTCTAGAGACACTCCACTTGATCCATCACTATATGAAGAAATGGAAAATGATCCTGAATTTTGTGGTAAAGTAAGTGGTGAATGTAATCACCATGTATTGTTTGATTTGATTAATGAGACAATGTTGGAGATTTATGGTAGGTCATATGGTTACCTTCCTTCTTCTATTGTAGGGTGTCATGTTCTCCATAAGGTATGGACTCTTATGAGTAAGTCTTTGTGTTTGGGATATAAAGTAGGCCAAAAGATAGATGATCATGTAAGTAGGGATTTAGCAAGAAATGATGGGTGGGTTAACATTCAATTTTATGATGAATGTTTTGGTTTGGAGGTGGATCACATGATTTTTCATGATCTACTTAAGGAAATAGTGTTGGATTTAGCTTTGTTATGA 1848 0.3582 MGRQKHSDSYPEYSKSLFHIIKHHPLCHHFIQKRQTYNNCDDDERTVPGTVIAQRDEAFSCDKRKNISLDKLSNLNVEEKVTPHSPVGKGCSQCDVATSSSDYSECNLCCKHHQSVKNDLLAPQVNDKKKHIFGVSTRLCKHFVGGLETTNMNKKILLTFRHDPVFSLVYHFHKQQHLQRAKMTLNRSESFPFPYSLSRRRERLYTDNETKKPVLFVSSKTACEQVMPSVAKAKVNGNFNMNEAFIIVKDVKFSSVSAKGQNSLKQKIENVTGERGKEKIRVAMDSVIHKLPQGQRLSDRLKNEILKKLKEPIIKREVQRKNSIRRTVSLQEPLESYCKTLENSFKTEARASQSEKLKLEKQRSHSPLRMLIPLQRILSLPDLQSFSYTSQKGDFSDFTPENQIIIDKNDLVISNILKSSGSISKSVSTEKPNNVVQKTEIRTNKLNYEIPQIHVDTKLKDEFNYVKYVLEISGFTTNESTSAWHSRDTPLDPSLYEEMENDPEFCGKVSGECNHHVLFDLINETMLEIYGRSYGYLPSSIVGCHVLHKVWTLMSKSLCLGYKVGQKIDDHVSRDLARNDGWVNIQFYDECFGLEVDHMIFHDLLKEIVLDLALL 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01201 615 PANTHER PROTEIN TRM32 424 612 IPR044257 -
Vivi5g01201 615 Pfam Domain of unknown function (DUF4378) 462 607 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01201 Vivi-Chr5 31402755 31405835 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01201 135 601 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 31.250 1.95e-51 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01201 - - vvo:131606466 1218.76