Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01179 ATGTCAAGGCCTGTTGAGAGAATAGCAGAGATCAATGATGGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACCACCGATGGAAAGTTGTGTCCAACAGCAAGGAACATTTTGAAATGATCTTTGTTGACAAATTGGGAGATGATATTCATGCTGTTGTTCCAGCACCGCATGTGTCGGTTTTCACCGAAAAATGCTTATTAGGCCATACTTATACTGTATCTAATTTTAAGGTGGTGCCTTATGTTCTGGCCTTCAGGGCATCGGGACACAGATATATGATAAAGTTTACTGCTGGAACGTCTGTTCTTGATGAAGACAAACATGAGATACCCCCGAAATCGATTTTATTTACAAGTTTTTCAGACATCATAACAGGGAGGTTTGACAAACATGTTCTGATTCATGTCGTTGGAATGGTGGATAGTATTGGTTATGCGCAGACTGAGTCAGGTGCAAAGAAGCAGCAAATTAGCATGATGTTGCGTGATCACAGCAACAACATGTTGAACTGTACTCTGTGGGAATCATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAGGGTTGCTGCATCACTACCTACAGTTGTGTTGCTTCAGTATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGACCCTTTTATGTGTTGATGCTGATTTTCCGATCATGAAAGACTTTATTGATAGAATGCCTGAGGAGAGCAAGGTAACCCTGTCTGACCAACTTGGAGGGAATTCCCAATATTCCTCCCAAAGTTCTGAAAATCAACAGCTCACTCCTGTGCAAAAATTGTTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTAGATTTTGCGCTACTGTCGCTACAACAAAATTATTAGTAGCATCTCCGTTTGGATGGTTCTATCGTGCCTGCCATATGTGTCAATCTATAGCGCGCGGGGACAGCCCCCCCTTTGAGTGTGAAGCTGGTCATGAAACCATGGCTGAAGTCCTTAGGTATAAGATTGAAATTGAGGTTACTCACGGGGGCCAAAGCTGCAATTTTGTCTTCTGGAACAGAGAATGTGAAATGTTGTTGGGTTTATCTGCATCGCAACTTCGTAACACTATGATTCAGGCTGGAATTACTGATCCATTGGACTTTCCGTTAGCACTTGATCAGTTGTTGAAGTTGGAAATGGCTATGAAGGTTAAGTGGCATCCACGCTGGAAGAACTGTTCTGTCGTTATGATTATAAAAAATGATCCTATTATCCAGCAACTTAAGGAAAAATAG 1311 0.4142 MSRPVERIAEINDGKELWKIVVRIHHRWKVVSNSKEHFEMIFVDKLGDDIHAVVPAPHVSVFTEKCLLGHTYTVSNFKVVPYVLAFRASGHRYMIKFTAGTSVLDEDKHEIPPKSILFTSFSDIITGRFDKHVLIHVVGMVDSIGYAQTESGAKKQQISMMLRDHSNNMLNCTLWESYADQFIKFNKVRVAASLPTVVLLQYAKVKEEGKYPLSVTNTYNVTLLCVDADFPIMKDFIDRMPEESKVTLSDQLGGNSQYSSQSSENQQLTPVQKLFSKAVVLPIAEIIQLTDVRFCATVATTKLLVASPFGWFYRACHMCQSIARGDSPPFECEAGHETMAEVLRYKIEIEVTHGGQSCNFVFWNRECEMLLGLSASQLRNTMIQAGITDPLDFPLALDQLLKLEMAMKVKWHPRWKNCSVVMIIKNDPIIQQLKEK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01179 436 Gene3D - 110 249 IPR012340 -
Vivi5g01179 436 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi5g01179 436 SUPERFAMILY Nucleic acid-binding proteins 294 411 IPR012340 -
Vivi5g01179 436 CDD RPA1_DBD_A_like 19 103 - -
Vivi5g01179 436 Gene3D - 255 433 IPR012340 -
Vivi5g01179 436 SUPERFAMILY Nucleic acid-binding proteins 118 243 IPR012340 -
Vivi5g01179 436 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi5g01179 436 Gene3D - 3 104 IPR012340 -
Vivi5g01179 436 CDD RPA1_DBD_B_like 137 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01179 Vivi-Chr5 29944374 29946356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01179 8 378 Core DNA Replication Machinery Family AT5G45400 19.750 8.28e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01179 - - vvo:131613993 855.514