Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01166 ATGGTTTTTACTTCAATACCAGCAGCTTATCTTGATGCAGCCAACTGGCAGCAACAGCAACAGAATCATCATCATCATCAACAACAACCAGAAAACGGCGGTTCCGGTTCCGGTTCCGTCTCTCAACAACTTTTTCAGACACCACCACCACAACCATCCCAAACACAGCCTCATGGAGCTGGTAGCACTGGCTCAATTAGGCCGGGATCGATGTCCGACAAAGCAAGAATGGCGAACATGCCTATGCCGGAGACGGCGCTGAAATGTCCGCGGTGCGAATCAACCAACACGAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCACGACACTTCTGCAAGACTTGCAGAAGGTACTGGACGAGAGGGGGCGCTTTAAGGAACGTCCCGGTTGGGGGAGGGTTCCGGAGAAACAAAAGAAGCAAAGGAAGTAACTCGGCCAAATCTCCGGCTAGCTCCGATCTCCAAACCGGTAGTGCTAGTTCAACAAACTCAATCACATCTCATAACAACCACTCATCCGCCTCGGGCGATATATTAGGCCTTACACCTCAAATGTCATCATTGAGATTCATGACACCATTACACCATAGTTTCAATAACCCTAATGAATTCGGAGGCGGCGATTTAGGGTTAAACTATGGATTTAGCTACATGGGAGGAGGAGGAGGAGGAGGTGGAGGTGATCTAGGAAGTTCTTTACTTGGTGGAAATGGTAACTCAATTTTATCTTCAACAAATGGTTTAGAACAATGGAAGATGCCTATGCCTATGGCTATGTCTATGCCTATGCCTATGCATATGTCTATGCCAATGACTCATCATCAACAACATCAATTTCCATTTTTGACCAACATAGAAACTTCAAATGGAAACTTATACCCTTTTGAAGGAAATGTTCAAAACCATGAGATGATGATATCAAATAGTGCATACATGAGGCCAAAGGTAACTTCAACTTCTGGAATTATGACTCAACTAGCTTCTGTGAAGATGGAAGATAGTATCAATAGAGGCTTCTTGGGAATCACCAGCAACAATAATAACAGTAATAATAACAATCAAGGAAGTGAACAATATTGGAATAGTGCTGTTATTACTGGCAATTCTGTAGCTAATTGGAATGATCATATTTCTGGTTTTAGTTCTTCTTCAAATACTACTAGTAATAACCAGATGTAG 1185 0.4312 MVFTSIPAAYLDAANWQQQQQNHHHHQQQPENGGSGSGSVSQQLFQTPPPQPSQTQPHGAGSTGSIRPGSMSDKARMANMPMPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSKGSNSAKSPASSDLQTGSASSTNSITSHNNHSSASGDILGLTPQMSSLRFMTPLHHSFNNPNEFGGGDLGLNYGFSYMGGGGGGGGGDLGSSLLGGNGNSILSSTNGLEQWKMPMPMAMSMPMPMHMSMPMTHHQQHQFPFLTNIETSNGNLYPFEGNVQNHEMMISNSAYMRPKVTSTSGIMTQLASVKMEDSINRGFLGITSNNNNSNNNNQGSEQYWNSAVITGNSVANWNDHISGFSSSSNTTSNNQM 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01166 394 MobiDBLite consensus disorder prediction 16 76 - -
Vivi5g01166 394 MobiDBLite consensus disorder prediction 16 49 - -
Vivi5g01166 394 ProSitePatterns Zinc finger Dof-type signature. 89 125 IPR003851 GO:0003677|GO:0006355
Vivi5g01166 394 MobiDBLite consensus disorder prediction 128 180 - -
Vivi5g01166 394 ProSiteProfiles Zinc finger Dof-type profile. 87 141 IPR003851 GO:0003677|GO:0006355
Vivi5g01166 394 MobiDBLite consensus disorder prediction 145 180 - -
Vivi5g01166 394 Pfam Dof domain, zinc finger 86 141 IPR003851 GO:0003677|GO:0006355
Vivi5g01166 394 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 292 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01166 Vivi-Chr5 29238391 29240224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01166 1 254 C2C2-Dof Transcription Factor Family AT2G37590 43.396 3.52e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi5g01166 zf-Dof 4.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01166 - - vvo:131606482 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01870 6 83601175 83603056 Vivi5g01166 5 29238391 29240224 PCT