Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01154 ATGGGTGATATCCGAGTCCTCTCTACGGATACAATCAAGGCAGCAAAATCCAGTGATACAAGAATCAATTTGACTCCATGGGATCTCCAACATCTACATGCTCCATCTAACAAAAAAGGCCTTCTTTATCACCATCCTTTAGTAGCAAATCAAATCCAACATCTAAAACACTCTCTATCCTCTGTCCTTGAATTTTTCCAACCTCTTGCAGGTCGTCTCAACATAACAGAACACGAAGATAATATTGTCTCGTGTTTTGTTATTTGCAACAATGCAGGTGTACTCTTTATTCATGCCGCGGTGGAAAATATTTGTGTTGCTGACATCCTAGAGCCCATCTACGTTCCTTCAATTGTCAGTTCATTTTTTCCTTTTATCGGAGTTAGTAACCATGAAGGCACATCACAACCATTGTTGGCTATTCAAGTTACGGAGCTAGTTGATGGCATCTTTATTGGTTGCACAGTCAACCATGTGGTTGTTGATGGAAATTCCTTATGGCATTTCATCAATTCATGGGCTGAAATTTCACGTGGTTCTTGTCATCGTCAAATATCCAAACTCCCAATACTAGAACGTTGGTTTCCTGATGACATCCAACACCCCATACAATTTCCTTTTAATATAGAGCCACAAAAGAATAACTCTGATGGACCGAGTTCTTCACCATCTTATGATGAAGAACTCAATATATCAGAGAGATTATTCCATTTTAAAAAGGAGAAAATCTTGGAACTAAAATCAAAACTCAATACACATATTGATAGTACCATCAAAATATCCTCCCTACAAGCGCTTTTAACTCATGTTTGGTGCTCCTTCGTTCGTTCCAAACAATTTGATTCACAGGAAGAAATTCATAACATGTTTTTGATAGGGGTTAGACCAAGATTACTTCCACCATTGGAAGAAGGTTATTTTGGAAATGCAATTATAGGTTGCATGGTTACCATGAAAGCTGGAGAGTTGTTAAAGGAAGGTGGTGTTTGTAATGGTGCTTGGGAGATGAACAAGTTAATTGCTTCACACTCTAATGAGAGGATAATGAGTCACTACGAGTCTTGGTTGAAAAATCCAATTATTTTTAGGTTTAACGGCATACCGAATAATAATTTTTTAATCATGAGCAGTTCTCCTCGGTTTGATGTTTATGGTAATGATTTTGGATGGGGAAAGCCAGTGGCAGTTCGGAGTTCCAATAAATCAAATGGAATTGTTAGTGTGTTTCCAGGAATAGAAGAAGGAAGTATTGATCTTCAAATCCGTCTTCCTTACAATATTTTAGAGGCAATGGAAAATGGCCTCACTTCATGA 1314 0.3782 MGDIRVLSTDTIKAAKSSDTRINLTPWDLQHLHAPSNKKGLLYHHPLVANQIQHLKHSLSSVLEFFQPLAGRLNITEHEDNIVSCFVICNNAGVLFIHAAVENICVADILEPIYVPSIVSSFFPFIGVSNHEGTSQPLLAIQVTELVDGIFIGCTVNHVVVDGNSLWHFINSWAEISRGSCHRQISKLPILERWFPDDIQHPIQFPFNIEPQKNNSDGPSSSPSYDEELNISERLFHFKKEKILELKSKLNTHIDSTIKISSLQALLTHVWCSFVRSKQFDSQEEIHNMFLIGVRPRLLPPLEEGYFGNAIIGCMVTMKAGELLKEGGVCNGAWEMNKLIASHSNERIMSHYESWLKNPIIFRFNGIPNNNFLIMSSSPRFDVYGNDFGWGKPVAVRSSNKSNGIVSVFPGIEEGSIDLQIRLPYNILEAMENGLTS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01154 437 Gene3D - 229 436 IPR023213 -
Vivi5g01154 437 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 433 - -
Vivi5g01154 437 Pfam Transferase family 5 432 - -
Vivi5g01154 437 Gene3D - 2 205 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01154 Vivi-Chr5 28858598 28860236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01154 29 423 Monolignol Biosynthesis Gene Families AT5G48930 26.747 2.25e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01154 - - vvo:131606449 606.675