Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01152 ATGGGTGTTGTCCGAGTCCTCTCTACCCACACAATCAAAGCATCAAAATCAAGTAATAAAAATATAGATTTGACTCCATGGGATCTTCAGCATCTATGTGCTACACCCAACAAAAAAGGCCTTCTATATCACCATCCAATATCATCAAACCAAATCCAACAGCTGAGACACTCTTTATCCTCTTCTTTGGAATTTTTCCAACCTCTTGCAGGCCGTCTCAAAATAACGGAACACGAGGATGATCACACATTTTCGTGTTCTATTATATGCAACAACGAAGGTGTACTCTTCATTCATGCTGAAGTTGAGAATACTTGTGTTGCTGACATTCTAGAACCCAGGTACGTTCCTTCAATTGTTGGTTCATTTTTCCCTTTCATCGGAGTTAGAAACTATGAAGGCACGTCACAACCATTGTTGGCGGTTCAAGTCACTGAGCTAGTCGATGGCATGTTCGTTGCTTGCACAATTAATCATGTGGTTGCTGACGGAAATTCCTTGTGGCATTTCATTAATTCATGGGCTGAAATTTCTCGTAGTTCTTGTCATCATCAGATATCCAAACTCCCAACATTGGAACGTTGGTTTCCAGATGGTACTCAACTTCCCATACGTTTTCCTTTTACGATGGAGTCACAAAATAATCACTCTGATGGGGCGAGTTCTTCAACATCTGATGAAGAACTCCATATATCAGAGAGGTTATTCCATTTCACAAAGGAAAAAATTTTACAACTAAAATCAAAAGTCAATACAAAAATTGATAGTACCTTCCAAATATCTTCTCTACAAGTGCTTTTTAGTCACGTTTGGTGCTCCATTATTCGTTCCAAACAAATTGATCCACAAGAACAAGTCCATAGTATATTAATGATAGGGGTTAGACTGAGATTTGTTCCACAATTGTCAGAAGGTTATTTTGGAAATGCATTTAAAGGTGGCATGGTTACAATGAAAGCTGAGGAGTTGTTGAAGGAAGATGGCGTTCGTAACACCGCCCTGGAGATAAACAAGTTAATTGCATCACACTCTAATGAGAAGATAAAGAATCACTATGAGTTTTGGTTGAAAAATCCAAATGTTTTTATACCTAAGAGCATGCCGAATAATTTATTAATCATGAGCAGTTCTCCACGATTTGATGTTTATGGTAATGATTTTGGATGGGGAAAGCCGGTTGGAGTTCGTAGTTCAAATGATATAAATGGAATTATTAGTGTGTTTGGTGGAATAGAAGAAGGTAGTATTGAACTACAAATTCGTCTCCCTTATAATATTTTGGAGGCATTGGGAAATGACATTGAGTTCACGGATGTTGTGTCCAACTAA 1329 0.38 MGVVRVLSTHTIKASKSSNKNIDLTPWDLQHLCATPNKKGLLYHHPISSNQIQQLRHSLSSSLEFFQPLAGRLKITEHEDDHTFSCSIICNNEGVLFIHAEVENTCVADILEPRYVPSIVGSFFPFIGVRNYEGTSQPLLAVQVTELVDGMFVACTINHVVADGNSLWHFINSWAEISRSSCHHQISKLPTLERWFPDGTQLPIRFPFTMESQNNHSDGASSSTSDEELHISERLFHFTKEKILQLKSKVNTKIDSTFQISSLQVLFSHVWCSIIRSKQIDPQEQVHSILMIGVRLRFVPQLSEGYFGNAFKGGMVTMKAEELLKEDGVRNTALEINKLIASHSNEKIKNHYEFWLKNPNVFIPKSMPNNLLIMSSSPRFDVYGNDFGWGKPVGVRSSNDINGIISVFGGIEEGSIELQIRLPYNILEALGNDIEFTDVVSN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01152 442 Gene3D - 2 206 IPR023213 -
Vivi5g01152 442 Pfam Transferase family 4 436 - -
Vivi5g01152 442 Gene3D - 229 435 IPR023213 -
Vivi5g01152 442 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01152 Vivi-Chr5 28813834 28815429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01152 53 393 Monolignol Biosynthesis Gene Families AT5G48930 27.198 6.77e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01152 - - vvo:131606449 707.597