Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01134 ATGGTTCGCTCTAGTAGCATCATCCTCTTTACTCACCTTGCTCGTCGATCACTTTTTCATGCCAACGATTCCGTATATCAAGTAGTTTTCCACAGGGGTTATAGGACATTGAATTTAGGATCATGCAATTCACCTAGAGTTATTGGTAGTAATGCACCAAATGTTGCAGTTAAAGGCTGTGTTAATTTGAAGAACTGGTTGCTATTGGGAGCGGCTAATTCATATTTAGGGGCGTCTAGATCAATTCATGGCTCAGCACCGTTGGCAAGGGACTATTATGATGTTCTTGGTGTGAGTAAAGATGCAAGCTCTTCTGAAATAAAGAAAGCTTACTATGGGCTTGCAAAGAAGCTTCATCCAGACACAAATAAAGATGATCCCGAGGCTGAAAAGAAGTTTCAAGAAGTCACGGTGGCATATGAGGTTTTGAAGGATGAGGAAAAGCGTCAACAGTATGATCAGGTTGGACATGATGGCTATGTAAACCAACAAAGCACTGGTTTCGGAGGCGAGGGTGGCTTCAATCCTTTCGAGCATGTGTTCAATGGCCAGGATATTTTCAACAACTTTTTCCGTCAGAGTGCTGATGTCAAGACTGTCATTGAACTATCTTTTACCGAAGCTATCCAAGGGTGCACCAAAACTTTGGCATTTCAAACAGATGTGCTTTGTAATGCTTGTGGTGGGAGTGGTGTTCCTCCTGGTACAAGACCTGAAACTTGTACGCGATGTAAAGGGTCAGGGATGATATTTGTACAAACTGGAATATTCAGAATGCAGAGTCCTTGTGGTACCTGCAAAGGAACTGGAAGAATTGTATCGAACTTCTGCAGGTCTTGCAAGGGTGCGAAAGTTGTCAAAGGAACAAAGACAGTAAAGTTAGATATTATATCTGGAATCGACAACAATGAGATCCTAAAGGTGTATGGCGGTGGAGGAGCAAATCCTGATGGACACCATTCTGGTGATCTATATGTTACTATCAAGGTTAGGGAAGATCCTGTTTTTCGCAGAGAAGGATTAGATGTTCATGTGAATGCTGTTTTAAGTTTTACTCAGGCGATTTTGGGGGCAACCATTGAGGTTCCGTCTTTTACTGGAAATGTAATGCTTAAGGTTCCCCCAGGCACCCAACCTGGTCAAAAGGTGGTTTTGAAAAGGAAAGGTATAAGGAAAGGAACAAATAGTTTCAAATATGGCGACCAATATGTTCATTTTAATGTCAGCATTCCAACAAGCCTGACAGAGAGGCAGCGTGAATTGATCGAAGAGTTTGCCAAGGAAGAGCAAGAGGAATCGGATAAACGGAAAGCTGCTTCGGCTTCTAGTTAA 1332 0.4234 MVRSSSIILFTHLARRSLFHANDSVYQVVFHRGYRTLNLGSCNSPRVIGSNAPNVAVKGCVNLKNWLLLGAANSYLGASRSIHGSAPLARDYYDVLGVSKDASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVTVAYEVLKDEEKRQQYDQVGHDGYVNQQSTGFGGEGGFNPFEHVFNGQDIFNNFFRQSADVKTVIELSFTEAIQGCTKTLAFQTDVLCNACGGSGVPPGTRPETCTRCKGSGMIFVQTGIFRMQSPCGTCKGTGRIVSNFCRSCKGAKVVKGTKTVKLDIISGIDNNEILKVYGGGGANPDGHHSGDLYVTIKVREDPVFRREGLDVHVNAVLSFTQAILGATIEVPSFTGNVMLKVPPGTQPGQKVVLKRKGIRKGTNSFKYGDQYVHFNVSIPTSLTERQRELIEEFAKEEQEESDKRKAASASS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01134 443 Pfam DnaJ central domain 224 284 IPR001305 GO:0031072|GO:0051082
Vivi5g01134 443 Pfam DnaJ C terminal domain 198 411 IPR002939 -
Vivi5g01134 443 SMART dnaj_3 90 148 IPR001623 -
Vivi5g01134 443 CDD DnaJ_zf 224 284 IPR001305 GO:0031072|GO:0051082
Vivi5g01134 443 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 59 434 - -
Vivi5g01134 443 FunFam Chaperone protein dnaJ 1, mitochondrial 331 438 - -
Vivi5g01134 443 ProSiteProfiles dnaJ domain profile. 91 156 IPR001623 -
Vivi5g01134 443 SUPERFAMILY Chaperone J-domain 90 190 IPR036869 -
Vivi5g01134 443 CDD DnaJ_C 195 414 - -
Vivi5g01134 443 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 211 287 IPR036410 -
Vivi5g01134 443 FunFam Chaperone protein dnaJ GFA2, mitochondrial 88 198 - -
Vivi5g01134 443 SUPERFAMILY HSP40/DnaJ peptide-binding domain 335 422 IPR008971 GO:0006457|GO:0051082
Vivi5g01134 443 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 338 IPR008971 GO:0006457|GO:0051082
Vivi5g01134 443 Gene3D DnaJ domain 88 197 IPR036869 -
Vivi5g01134 443 PRINTS DnaJ domain signature 93 111 IPR001623 -
Vivi5g01134 443 PRINTS DnaJ domain signature 148 167 IPR001623 -
Vivi5g01134 443 PRINTS DnaJ domain signature 128 148 IPR001623 -
Vivi5g01134 443 PRINTS DnaJ domain signature 111 126 IPR001623 -
Vivi5g01134 443 Hamap Chaperone protein DnaJ [dnaJ]. 88 438 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vivi5g01134 443 ProSitePatterns Nt-dnaJ domain signature. 133 152 IPR018253 -
Vivi5g01134 443 Gene3D - 331 441 - -
Vivi5g01134 443 ProSiteProfiles Zinc finger CR-type profile. 211 289 IPR001305 GO:0031072|GO:0051082
Vivi5g01134 443 FunFam Molecular chaperone DnaJ 216 289 - -
Vivi5g01134 443 Pfam DnaJ domain 91 153 IPR001623 -
Vivi5g01134 443 Gene3D - 224 284 - -
Vivi5g01134 443 Gene3D - 198 326 - -
Vivi5g01134 443 CDD DnaJ 91 145 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01134 Vivi-Chr5 28232745 28239025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01134 92 153 C2H2 Transcription Factor Family AT1G74250 43.284 8.54e-08 52.8